Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20esculenta_20[genbank_20GCA_5F000819925.1_202015-01-16] 298 sequences; 20,196,985 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq79 205 1e-47 seq236 109 6e-19 >seq79 Length=472637 Score = 205 bits (226), Expect = 1e-47 Identities = 544/819 (66%), Gaps = 23/819 (3%) Strand=Plus/Plus Query 106506 TGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGT 106565 ||||||| | || || ||||||| |||||| | ||| || || || | ||||| |||| Sbjct 420669 TGTACTCGATGATCTCGGTACACAGGTTGGAGCACTTGATGGTGCCGAGGTTCTTCTGGT 420728 Query 106566 TACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTG 106625 | ||||| |||| |||||||||||||| ||| | || | || ||||| ||||| | Sbjct 420729 TGCTCTTGCGGTTGGCAGCATCCTTGTAGAGGATGAACGGGTTACCAGTCTCGGTCTGCG 420788 Query 106626 ACTTGAGAATTGCCTTCCACA-CATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCC 106684 ||| ||| || || | ||| | | || | | || | || || |||| || ||||| Sbjct 420789 ACTCGAGGATGGCGTACCAGAGCTTCTGAGCCTTG-ACGGTGCGCTTGGAACGACCCTCG 420847 Query 106685 GCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGC-GTCGGAGAGACCTGG 106743 |||||||| ||||||| |||||||| ||| ||| || ||||| ||||| || Sbjct 420848 GCCTCGTAGCGCTCGTAGAGGCGCTCAAACTCGTCA-CCATAGCAGTCGGCAAGACCGGG 420906 Query 106744 TGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAG 106803 || || || || | || ||||| | || || ||| |||| ||||||||| || Sbjct 420907 GCACTCGTTGGGGCACATGAGCGACCAGTCTCCGTTCTGCTCGACCCTCTTCATGAAGAG 420966 Query 106804 GTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTT 106863 ||| |||| ||| || | | ||||| |||| || |||| || | ||| ||||| Sbjct 420967 GTCGGGAACCCAGAGTGCGTAGAAGAGCTCTCGGGCACGCACCTCCTCCTTACCGTGGTT 421026 Query 106864 GAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGAT 106923 || | || |||||||| | | ||||| |||||| ||||||| |||| || | Sbjct 421027 CTTGCGGAGGTCGAGGAACTCGAACACATCCGAGTGCCAAGGCTCAATGTAGATGGCAAA 421086 Query 106924 AGATCCCTTTCGACGC------CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATAC 106977 | || ||||| ||| | || | || ||||| || ||| ||| || || Sbjct 421087 GGCACC---GGGACGCTTGTTGCCACCCTGGTCGACGTAGCGAGCCGTGTTGTTGAAGAC 421143 Query 106978 GCGAAGCATTGGAATAATACCAT--CTGATTGACCATTTGTCCCCCGAA--TACGAGATT 107033 ||||||||| || | ||||| | |||| ||| || || || || |||||| Sbjct 421144 GCGAAGCATGGGCACGATACCGTTGCTGA--CACCGTTGGTGCCGGCAATGTACGAG--C 421199 Query 107034 TATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCG 107093 | | ||| | ||||||| | || ||||| || || ||| ||||| | Sbjct 421200 CAGTACCTCGGATGCAGTGGATGTTGAGACCGATACCACCGGCAGTCTTGGAGATCATGG 421259 Query 107094 CACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGA 107153 |||| | | || || | ||||| || | ||| ||||| ||||| ||| || |||| Sbjct 421260 CACAGGTCTTGAGGGTGTCGTAGATGCCATCGATCGAGTCGTCCTTCATGGTGACGAGGA 421319 Query 107154 AGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAA 107213 | || || | ||| || |||||| || || |||||||| || || | ||||| Sbjct 421320 AACACGACGAGAGCTGGGGGTGTGGTGTCCCGGCGTTGAAGAGAGTGGGCGAAGCGTGGG 421379 Query 107214 TGAA-CATACCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCG 107272 | || || | || ||||| || ||| || || | | | || ||||| | ||| Sbjct 421380 TAAAGCACTTC-TGCGACATGAGGTTGTAGGTTTCGATGGCGCTCTCGATGTCCTGGCCG 421438 Query 107273 TGGATGCCGATGGCCACACGCATAAACATGTATTGGGGT 107311 ||||| |||| ||| |||||||| | ||||| |||||| Sbjct 421439 TGGATACCGACGGCGACACGCATGAGCATGTGCTGGGGT 421477 >seq236 Length=132806 Score = 109 bits (120), Expect = 6e-19 Identities = 124/165 (75%), Gaps = 1/165 (1%) Strand=Plus/Plus Query 117274 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCT 117333 ||||| || |||||||||||| || || || || ||||| || |||||| || || Sbjct 3627 GCAAAGTCGGTGTGGAGACCCTCGTCACGCGAGATGAGTTCGTTGGAGAAGGTGAGACCG 3686 Query 117334 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 117393 ||||| ||||| |||||||| | ||| | || | | ||| || || ||||||||||| Sbjct 3687 GGCATAAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGAGCCAGAGAAGAAGATG 3746 Query 117394 CCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGG-AGCG 117437 ||||| || ||||| |||| || ||||||||||||| |||| Sbjct 3747 CCCTCAACGGCGGCAAAGGCAACGAGACGCTCGGCGAAGGTAGCG 3791 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589978602321520