Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20esculenta_20[genbank_20GCA_5F000819925.1_202015-01-16] 298 sequences; 20,196,985 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq1 172 1e-37 seq226 147 5e-30 seq247 131 4e-25 >seq1 Length=1882320 Score = 172 bits (190), Expect = 1e-37 Identities = 164/210 (78%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| ||||| |||||||| || || ||||| ||||| |||| ||| || | || ||||| Sbjct 161288 AACGAGGTGGAGAGTGGATTCCTTCTGAATGTTGTAGTCGGAAAGGGTGCGGCCGTCTTC 161347 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 |||||||| || || ||||| ||||| || ||||| || || || || || ||||| || Sbjct 161348 CAGCTGCTTGCCGGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATTCCCTCCTTGTCCTG 161407 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 ||| || ||||||||| ||||||||||||||| || ||||| ||||||| ||||| Sbjct 161408 AATCTTGGCCTTGACGTTGTCAATGGTGTCCGAAGACTCGACTTCGAGGGTAATGGTCTT 161467 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 |||||||| || || || || | |||||| Sbjct 161468 ACCTGTCAAGGTCTTGACAAAGATTTGCAT 161497 Score = 152 bits (168), Expect = 1e-31 Identities = 159/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 |||||||| || |||||||| || || || ||||| || | ||| || | || || ||| Sbjct 79421 ACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGACCGTCCTCG 79362 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||||||||| |||||||||||||| || ||||| || || || || || ||||| || Sbjct 79361 AGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCAGGGGGGATTCCCTCCTTGTCCTGG 79302 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||||||||| || |||||||||||| ||||| |||||||| | ||||| Sbjct 79301 ATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCCACCTCAAGGGTGATGGTCTTA 79242 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || || || | ||||| Sbjct 79241 CCCGTAAGGGTCTTCACAAAGATCTGCAT 79213 >seq226 Length=271753 Score = 147 bits (162), Expect = 5e-30 Identities = 158/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || || || |||||||| || || || |||||||| | || |||| |||||||| Sbjct 170142 ACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAATCCGAGAGGGTTCGGCCATCTTCC 170083 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | ||||||||| || |||||||| || || ||||| || ||||| || || ||||| || Sbjct 170082 AACTGCTTACCAGCAAAGATAAGGCGCTGCTGGTCAGGGGGAATACCCTCCTTGTCCTGG 170023 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||||||||| ||||||||||| ||| ||||| || ||||| | ||||| Sbjct 170022 ATCTTGGCCTTGACGTTGTCAATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTA 169963 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||| ||| || || || | ||||| Sbjct 169962 CCGGTCAGAGTCTTGACAAAGATCTGCAT 169934 Score = 147 bits (162), Expect = 5e-30 Identities = 158/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 |||||||| | |||||||| || ||||| || || || | || || | ||||| ||| Sbjct 170370 ACAAGGTGCAAGGTGGACTCCTTCTGAATGTTATAGTCCGAGAGCGTGCGGCCATCCTCG 170311 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| ||||| ||||| || ||||| ||||| || ||||| ||||| ||||| ||| Sbjct 170310 AGCTGCTTTCCTGCAAAGATGAGACGTTGCTGGTCAGGGGGAATACCTTCCTTGTCCTGA 170251 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||||||||| ||||||||||| ||| || || || | || | ||||| Sbjct 170250 ATCTTGGCCTTGACGTTGTCAATGGTGTCTGAAGACTCGACCTCCAAAGTGATGGTCTTG 170191 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || ||||| || || || || | |||||| Sbjct 170190 CCAGTCAAGGTCTTGACAAAGATTTGCAT 170162 Score = 143 bits (158), Expect = 6e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 |||||||| | |||||||| || ||||| || || || | || || | ||||| ||| Sbjct 170826 ACAAGGTGCAAGGTGGACTCCTTCTGAATGTTATAGTCCGAGAGCGTGCGGCCATCCTCG 170767 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| ||||| ||||| || ||||| ||||| || ||||| ||||| ||||| ||| Sbjct 170766 AGCTGCTTTCCTGCAAAGATGAGACGTTGCTGGTCAGGGGGAATACCTTCCTTGTCCTGA 170707 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||||||||| ||||||||||| ||| || || || || || | ||||| Sbjct 170706 ATCTTGGCCTTGACGTTGTCAATGGTGTCTGAAGACTCGACCTCGAGCGTGATTGTCTTG 170647 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| | || || || || | ||||| Sbjct 170646 CCTGTGAGCGTCTTGACAAAGATCTGCAT 170618 Score = 141 bits (156), Expect = 2e-28 Identities = 162/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||| |||||| || || || || ||||| || || || |||||||| | ||| || | Sbjct 171063 AGTCGCAAAACGAGATGGAGCGTAGACTCCTTCTGGATGTTGTAATCCGAAAGCGTCCGT 171004 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 || || ||||||||||| |||||||| || || ||||| ||||| |||||||| || || Sbjct 171003 CCGTCCTCGAGCTGCTTTCCTGCGAAAATGAGACGTTGCTGGTCAGGAGGAATACCCTCC 170944 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 ||||| ||||| || |||||| || ||||| ||||| ||| || || || || || Sbjct 170943 TTGTCCTGAATCTTGGCCTTGACATTGTCAATCGTGTCGGAAGACTCAACCTCGAGCGTG 170884 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | ||||| ||||| | || || || || | ||||| Sbjct 170883 ATTGTCTTGCCTGTGAGCGTCTTGACAAAGATCTGCAT 170846 Score = 134 bits (148), Expect = 3e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 |||||||| | ||| ||| || ||||| ||||| || | || || | ||||| ||| Sbjct 171282 ACAAGGTGCAAGGTGCTCTCCTTCTGAATGTTGTAGTCCGAGAGCGTGCGGCCATCCTCG 171223 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| ||||| ||||| || ||||| ||||| || ||||| ||||| ||||| ||| Sbjct 171222 AGCTGCTTTCCTGCAAAGATGAGACGTTGCTGGTCAGGGGGAATACCTTCCTTGTCCTGA 171163 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || |||||| || ||||||||||| ||| || || || | || | ||||| Sbjct 171162 ATCTTGGCCTTGACATTGTCAATGGTGTCTGAAGACTCGACCTCCAAAGTGATGGTCTTG 171103 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || ||||| || || || || | ||||| Sbjct 171102 CCAGTCAAGGTCTTGACAAAGATCTGCAT 171074 >seq247 Length=126104 Score = 131 bits (144), Expect = 4e-25 Identities = 140/185 (76%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 |||||||| || || ||||| || || || ||||| || | || || | || || ||| Sbjct 71176 ACAAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCCTCG 71117 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||||||||| |||||||| || || || ||||| || ||||| || || || || ||| Sbjct 71116 AGCTGCTTACCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGAATACCCTCCTTATCCTGA 71057 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| || || || ||||||||||| ||||| |||||||||| ||||| Sbjct 71056 ATCTTGGCCTTAACATTGTCGATGGTGTCCGAGGACTCCACCTCAAGGGTAATGGTCTTA 70997 Query 195112 CCTGT 195116 ||||| Sbjct 70996 CCTGT 70992 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109477363860566