Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20esculenta_20[genbank_20GCA_5F000819925.1_202015-01-16] 298 sequences; 20,196,985 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq1 114 8e-21 seq226 113 3e-20 >seq1 Length=1882320 Score = 114 bits (126), Expect = 8e-21 Identities = 152/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||| | ||| | ||| ||| ||||||||||| ||||| |||||| | || | || || Sbjct 161288 AACGAGGTGGAGAGTGGATTCCTTCTGAATGTTGTAGTCGGAAAGGGTGCGGCCGTCTTC 161347 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 |||||| || |||||||| || ||||| |||||||| | || | ||||||||||| Sbjct 161348 CAGCTGCTTGCCGGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATTCCCTCCTTGTCCTG 161407 Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 |||||| |||||| | || | || | ||| || |||| ||| ||||| || Sbjct 161408 AATCTTGGCCTTGACGTTGTCAATGGTGTCCGAAGACTCGACTTCGAGGGTAATGGTCTT 161467 Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || | ||||| |||||||| |||||| Sbjct 161468 ACCTGTCAAGGTCTTGACAAAGATTTGCATA 161498 Score = 113 bits (124), Expect = 3e-20 Identities = 145/198 (73%), Gaps = 8/198 (4%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| |||||||||||| | || | || || ||||| || ||||| || Sbjct 79403 TCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGACCGTCCTCGAGCTGCTTACCGGCGAAG 79344 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || ||||| |||||||| | || | ||||||||||| ||||| ||||| Sbjct 79343 ATAAGTCGCTGCTGGTCAGGGGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTGAC---- 79288 Query 34911 GCTATCGAT--TCACCG--GCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 | | ||||| | ||| | ||| || || | ||| ||||| || ||||| || ||||| Sbjct 79287 GTTGTCGATGGTGTCCGAAGACTCCACCTCAAGGGTGATGGTCTTACCCGTAAGGGTCTT 79228 Query 34967 CACAAAGATCTGCATATT 34984 ||||||||||||||| || Sbjct 79227 CACAAAGATCTGCATGTT 79210 >seq226 Length=271753 Score = 113 bits (124), Expect = 3e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || |||||||||||||||||||| || | || |||| || ||||| ||||| ||||| Sbjct 170808 TCCTTCTGAATGTTATAGTCCGAGAGCGTGCGGCCATCCTCGAGCTGCTTTCCTGCAAAG 170749 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || ||||||||||| | || | || |||||||| |||||| |||||| Sbjct 170748 ATGAGACGTTGCTGGTCAGGGGGAATACCTTCCTTGTCCTGAATCTTGGCCTTGACGTTG 170689 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || | ||| || |||| || || || || || ||||| ||||| ||| Sbjct 170688 TCAATGGTGTCTGAAGACTCGACCTCGAGCGTGATTGTCTTGCCTGTGAGCGTCTTGACA 170629 Query 34971 AAGATCTGCATA 34982 |||||||||||| Sbjct 170628 AAGATCTGCATA 170617 Score = 107 bits (118), Expect = 1e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| || |||||||| | ||| | || || ||||| ||||| || || Sbjct 171036 TCCTTCTGGATGTTGTAATCCGAAAGCGTCCGTCCGTCCTCGAGCTGCTTTCCTGCGAAA 170977 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || ||||||||||| | || | ||||||||||| |||||| ||||| Sbjct 170976 ATGAGACGTTGCTGGTCAGGAGGAATACCCTCCTTGTCCTGAATCTTGGCCTTGACATTG 170917 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | |||| || | |||||| |||| || || || || || ||||| ||||| ||| Sbjct 170916 TCAATCGTGTCGGAAGACTCAACCTCGAGCGTGATTGTCTTGCCTGTGAGCGTCTTGACA 170857 Query 34971 AAGATCTGCATA 34982 |||||||||||| Sbjct 170856 AAGATCTGCATA 170845 Score = 105 bits (116), Expect = 4e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| || ||||| ||| |||| |||| |||| ||| || || ||||| Sbjct 170124 TCCTTCTGGATGTTGTAATCCGAGAGGGTTCGGCCATCTTCCAACTGCTTACCAGCAAAG 170065 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | ||||||||||| ||||| |||||| Sbjct 170064 ATAAGGCGCTGCTGGTCAGGGGGAATACCCTCCTTGTCCTGGATCTTGGCCTTGACGTTG 170005 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || | ||| || |||| ||| ||||| || || || |||||||| ||| Sbjct 170004 TCAATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTACCGGTCAGAGTCTTGACA 169945 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 169944 AAGATCTGCAT 169934 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 34785 GTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCG 34844 ||||| || ||||||||||| |||||||| || | || |||| || ||||| ||||| Sbjct 171270 GTGCTCTCCTTCTGAATGTTGTAGTCCGAGAGCGTGCGGCCATCCTCGAGCTGCTTTCCT 171211 Query 34845 GCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTG 34904 ||||| || || ||||||||||| | || | || |||||||| |||||| ||| Sbjct 171210 GCAAAGATGAGACGTTGCTGGTCAGGGGGAATACCTTCCTTGTCCTGAATCTTGGCCTTG 171151 Query 34905 ACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTC 34964 || | || | || | ||| || || | || ||||| || || || | ||| Sbjct 171150 ACATTGTCAATGGTGTCTGAAGACTCGACCTCCAAAGTGATGGTCTTGCCAGTCAAGGTC 171091 Query 34965 TTCACAAAGATCTGCATA 34982 || ||||||||||||||| Sbjct 171090 TTGACAAAGATCTGCATA 171073 Score = 98.7 bits (108), Expect = 6e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || |||||||||||||||||||| || | || |||| || ||||| ||||| ||||| Sbjct 170352 TCCTTCTGAATGTTATAGTCCGAGAGCGTGCGGCCATCCTCGAGCTGCTTTCCTGCAAAG 170293 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || ||||||||||| | || | || |||||||| |||||| |||||| Sbjct 170292 ATGAGACGTTGCTGGTCAGGGGGAATACCTTCCTTGTCCTGAATCTTGGCCTTGACGTTG 170233 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || | ||| || || | || ||||| || || || | ||||| ||| Sbjct 170232 TCAATGGTGTCTGAAGACTCGACCTCCAAAGTGATGGTCTTGCCAGTCAAGGTCTTGACA 170173 Query 34971 AAGATCTGCATA 34982 ||||| |||||| Sbjct 170172 AAGATTTGCATA 170161 Score = 86.0 bits (94), Expect = 4e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| || || ||||| || ||| | || |||| || || || |||||||| || Sbjct 170580 TCCTTCTGGATATTGTAGTCAGACAGGGTGCGGCCATCCTCGAGTTGCTTTCCGGCGAAA 170521 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | |||||||| || ||||| |||||| Sbjct 170520 ATGAGACGCTGCTGGTCAGGAGGAATACCCTCCTTATCTTGGATCTTGGCTTTGACATTG 170461 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || || ||| || |||| || || || || || || || ||||| ||| Sbjct 170460 TCAATAGTATCCGAGGACTCGACCTCGAGTGTGATCGTCTTACCAGTAAGGGTCTTGACA 170401 Query 34971 AAGATCTGCATA 34982 |||||||||||| Sbjct 170400 AAGATCTGCATA 170389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324632420971344