Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20esculenta_20[genbank_20GCA_5F000819925.1_202015-01-16] 298 sequences; 20,196,985 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq226 95.1 1e-13 >seq226 Length=271753 Score = 95.1 bits (104), Expect = 1e-13 Identities = 133/184 (72%), Gaps = 2/184 (1%) Strand=Plus/Minus Query 563293 ATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTT 563352 |||||||| |||| || || | ||| || ||||| |||||||| ||||| || | Sbjct 170571 ATATTGTAGTCAGACAGGGTGCGGCCATCCTCGAGTTGCTTTCCGGCGAAAATGAGACGC 170512 Query 563353 TGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTA 563412 ||||| ||||||||||| || || |||||||| || || ||| || ||||| ||| Sbjct 170511 TGCTGGTCAGGAGGAATACCCTCCTTATCTTGGATCTTGGCTTTGACATTGTCAATAGTA 170452 Query 563413 TCAGTGTGAGTACA-TTCGAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTG 563471 || | | || | | ||||| || | || ||||||||||| || || || || || || Sbjct 170451 TCCGAG-GACTCGACCTCGAGTGTGATCGTCTTACCAGTAAGGGTCTTGACAAAGATCTG 170393 Query 563472 CATA 563475 |||| Sbjct 170392 CATA 170389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029280240416020