Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20esculenta_20[genbank_20GCA_5F000819925.1_202015-01-16] 298 sequences; 20,196,985 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq79 351 2e-91 seq236 192 1e-43 >seq79 Length=472637 Score = 351 bits (388), Expect = 2e-91 Identities = 1187/1817 (65%), Gaps = 99/1817 (5%) Strand=Plus/Plus Query 212688 AGATGTAGGTTCAGGGACTGACTCTGGTCTATGAATGGGGCCCTGTCAGCGGCCATGTCT 212747 || || | ||| || ||||| |||| ||||| | | | | ||| ||||||||||| Sbjct 419837 AGGTGGATGTTGAGCGACTGTGACTGGCAGATGAAGGCGCCTCGGTCGGCGGCCATGTCG 419896 Query 212748 ATGATATCTCTCTGGGAGAGCTCCCACACGGTCTTGAAGAT-TTCTT--TGAGGTCCTCT 212804 ||||| | | ||| || |||||||||||||||| | | ||||| || |||| Sbjct 419897 ATGATGGCCTTTTGGCTGATCTCCCACACGGTCTTGTAAAGCTTCTTGATGCGGTC---- 419952 Query 212805 GGGAAG-CCGGGGATGTTCTGCACAGACCCCCTGTGTATGGTCAGCTGCAGGCG--CATG 212861 ||||| ||||| | ||||| | || || | ||| | | | ||| | ||| Sbjct 419953 GGGAATACCGGGCACATTCTGGATCGAGCCACCGTGGGCGATGA--TGCGGTTCTTCATC 420010 Query 212862 TCCTCGTTCCAGAGGCCCCTGGTCTCCAGGCACTTG-----ACCAGGTGAGGGTTGACTA 212916 |||||||| || ||| || || || || | | |||||| |||| || | Sbjct 420011 GTGTCGTTCCACAGACCC-TGCTCGACAAGCTCGCGGAGCAACCAGG----GGTTAACCA 420065 Query 212917 TCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGC 212976 |||||| || || | |||||| | | | ||| | ||| || ||||| ||||| | || Sbjct 420066 CCTGGAACTCTCCGGCGAGCACACGGCGCGAGTAGATGTTGGATGTGTACGGCTCAAAGC 420125 Query 212977 TCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGAC 213036 ||||||| || |||||||| || ||| || |||||||| || | || | Sbjct 420126 ACTCGTTGAAGCCGAGAATCTGACTCGTCGAGGCGGTAGGCATGGGGGCGAGGAGCAAGG 420185 Query 213037 TGTTCCTCACTCCGTGCTCGCCGATGAGGCGCCGAAGCTCTGCCCAGTCCCATCTGCCAG 213096 ||| | || ||||||| | | || | | ||||| ||||||||||| Sbjct 420186 AGTTGCGCAGACCGTGCTTGGCAATCTTGGCCTTGAGCTCAGCCCAGTCCCA-------- 420237 Query 213097 ACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGATGCCTTTGCTCACGGGGC 213156 ||||||| | || |||||||||| |||||| | | | ||| | ||| Sbjct 420238 -CAGGTCCGATGGGGTGACACCCCACATGTCATACTGCA-GCTCACCCTGCGAAGCAGGC 420295 Query 213157 TGCCCTG-GTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGACGCCTGCAGG 213215 || | ||| | ||| | ||| ||||| | ||||||||||| || || || Sbjct 420296 GAGCCGGCGTACGTCTCGTACGTGCCGTGCTCTTGAGCCAGCTCGCACGATCGCTCGAGC 420355 Query 213216 GCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTCTGGGGACGTG 213275 ||||||| ||| || || ||||| |||| | ||| || ||||| || ||| | Sbjct 420356 GCAGCGTGGTAAATAGTCTCAAAGATCTGCACGTTAAGTCGGCGAGCCTCGGGCGACTCG 420415 Query 213276 AAGGG------CATCATCATGCGTTGGAACACATCAGCCAGCCCCTGGACCCCGATGCCG 213329 || | ||| |||||| || | ||||| || ||||| || ||||| ||| Sbjct 420416 AACGCGTAGCCCATGATCATG------AAGGCGTCAGCAAGACCCTGAACACCGATACCG 420469 Query 213330 ATGGGTCTGTGTCTCAGGTTAGACTTG-GAGCACTCCTCCAAGGGGTAAAAGTTGCAGTC 213388 ||||||| ||| | || ||| || || |||| ||||| | |||||| ||||| ||| Sbjct 420470 ATGGGTCGGTGGCGCATGTTGGATCTGCGAGCT-TCCTCGACGGGGTAGTAGTTGATGTC 420528 Query 213389 GATGATCTTGTTGAGGTT---GCGGGTGGCCACTTTGGTGACATGGGCCAGGTACTCGTG 213445 |||||||||||||||||| || | ||||| |||| || | | || || | Sbjct 420529 GATGATCTTGTTGAGGTTCTTGCAGATGGCC---TTGGCAACCTTGTGGAG--ACGC--- 420580 Query 213446 ATTGAACACGTA-GCCCCCGT--CCTGCAC---AAACTCAGGCAGGGCGATGCTGGCCAG 213499 || || |||| | | || || | | |||| ||||| || || ||| || Sbjct 420581 -TTAAAGTCGTACGTCTTGGTGACCGGGTCGATAAACGTGGGCAGCGCAATCGAGGCAAG 420639 Query 213500 GTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGTTGCT 213559 |||||| || || ||||| | | | ||||||| ||||||||||| ||||||||| Sbjct 420640 GTTGCACACAGCGACCTCGTCTGGCGCACTGTACTCGATGATCTCGGTACACAGGTTGGA 420699 Query 213560 GCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGAATCCTTGTAGAG 213619 ||| ||||||||| ||||||| ||||| ||| |||||||| |||||||||||| Sbjct 420700 GCACTTGATGGTGCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCAGCATCCTTGTAGAG 420759 Query 213620 CATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCTCCAGAGGTACCTGGC 213679 ||| | ||| || ||||| ||| ||| | || || | |||||| | | || Sbjct 420760 GATGAACGGGTTACCAGTCTCGGTCTGCGACTCGAGGATGGCGTACCAGAGCTTCTGAGC 420819 Query 213680 CTTGACCACCCGCCTGACAGCTCCGGGCGTAGCCTCGTACTGTTCGTAGAGCTCGTTGAA 213739 |||||| ||| || | || || |||||||| | |||||||| | || Sbjct 420820 CTTGACGGTGCGCTTGGAACGACCCT-CG--GCCTCGTAGCGCTCGTAGAGGCGCTCAAA 420876 Query 213740 TTCGTGGCCCCAGACCCTGTCCAGTCCCGGACAGGATGCGGGACACATGAGGCTCCAGTC 213799 |||| || || | | || || || || ||| |||||||| |||||| Sbjct 420877 CTCGTCACCATAGCAGTCGGCAAGACCGGGGCACTCGTTGGGGCACATGAGCGACCAGTC 420936 Query 213800 CCCGTCAT-CTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGT 213858 |||| | ||| ||| |||| |||||| ||||| || ||||| || ||| ||| || | Sbjct 420937 TCCGTTCTGCTC-GACCCTCTTCATGAAGAGGTCGGGAACCCAGAGTGCGTAGAAGAGCT 420995 Query 213859 CCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGT 213918 | | || | | ||| ||| || ||| ||||| || || || || || || | | Sbjct 420996 CTCGGGCACGCACCTCCTCCTTACCGTGGTTCTTGCGGAGGTCGAGGAACTCGAACACAT 421055 Query 213919 CCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCG---GCCTCTTGCCGCCCTGGT 213975 ||| |||||| ||||| ||||||||||||||||| || | || | ||||| ||||||| Sbjct 421056 CCGAGTGCCAAGGCTCAATGTAGATGGCAAAGGCACCGGGACGCTTGTTGCCACCCTGGT 421115 Query 213976 CCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGGGTACCAGCCCGTTG--GACTG 214033 | || | ||| ||||||||| ||| || | ||| || | |||||| ||| Sbjct 421116 CGACGTAGCGAGCCGTGTTGTTGAAGACGCGAAGCATGGGCACGATACCGTTGCTGAC-- 421173 Query 214034 TCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCAGGTTGC---TCATGGAGAGCCC 214090 |||||||| || || || |||||||| || |||| || ||| ||| ||| || Sbjct 421174 ACCGTTGGTGCCGGCAATGTACGAGCC--AGTACCTC-GGATGCAGTGGATGTTGAGACC 421230 Query 214091 TATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACAGTCTCCATGATGCCGGC 214150 || |||||||| ||||||||||||||| ||| | | | || || |||||| | Sbjct 421231 GATACCACCGGCAGTCTTGGAGATCATGGCACAGGTCTTGAGGGTGTCGTAGATGCCATC 421290 Query 214151 CATGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCGAGAGCTGGGGCCTGGACGAGCC 214210 || ||| || | | | | | | ||| || |||||||||||| | | || Sbjct 421291 GATCGAGTCGTCCTTCATGGTGACGAGGAAACACGACGAGAGCTGGGGGTGTGGTGTCCC 421350 Query 214211 AGAGTTGAAAAGCGTGGGGCTGGCATGGATCATAAACTTGTTAGAGAGGAGCCTGTAGGT 214270 | |||||| || ||||| || ||| | | |||| | || | ||| ||||||| Sbjct 421351 GGCGTTGAAGAGAGTGGGCGAAGCGTGGGTAAAGCACTTCTGCGACATGAGGTTGTAGGT 421410 Query 214271 CTCCAGGACTGAGGGGATGTCGTGCTTGTGGATCTGTAGAGCGCACCTCATCAGCATGTG 214330 || | | | |||||| || |||||| | ||| | ||| |||||||| Sbjct 421411 TTCGATGGCGCTCTCGATGTCCTGGCCGTGGATACCGACGGCGACACGCATGAGCATGTG 421470 Query 214331 CTGGGGCCTCTCTATGGGTC-CTTTGGGGCCCTT------GAGCAGGTAGGAGCGCTCCA 214383 |||||| | ||| |||| | || ||| || ||| |||||||| ||||| | Sbjct 421471 CTGGGGTCGCTC----GGTCACCTT---GCCGTTGATGCGGAGGAGGTAGGAACGCTCGA 421523 Query 214384 GAGTCTTGAACCCAAAGTAGGAGTAG-GTATGATCGTTCCCGTGTATGAGGGCAGCGTCC 214442 |||||||||| |||||| || |||| | | | ||| | ||| |||| ||| | ||| Sbjct 421524 GAGTCTTGAAGCCAAAGAAGTTGTAGTGGAAG-TCGCGCTCGTAGATGATGGCCGAGTCG 421582 Query 214443 AGCTCTTCCGCGTGCTC 214459 |||| ||| |||||| Sbjct 421583 AGCTGGTCCTTGTGCTC 421599 >seq236 Length=132806 Score = 192 bits (212), Expect = 1e-43 Identities = 379/559 (68%), Gaps = 9/559 (2%) Strand=Plus/Plus Query 48123 AGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGA 48182 |||| | ||| |||||||| |||| | || ||||| || |||||| ||||||||| Sbjct 3616 AGAGGAGGCAAGCAAAGTCGGTGTGGAGACCCTCGTCACGCGAGATGAGTTCGTTGGAGA 3675 Query 48183 AGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAG 48242 || |||||| ||||| | || | || ||||||||||| || | ||||| ||||||| Sbjct 3676 AGGTGAGACCGGGCATAAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGAGCCAG 3735 Query 48243 AGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCT 48302 |||||||||||||||| || || || || || ||| | ||| |||| | |||| Sbjct 3736 AGAAGAAGATGCCCTCAACGGCGGCAAAGGCAACGAGACGCTCGGCGAAGGTAGCGCGTC 3795 Query 48303 TGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTA 48362 ||| ||||||| ||| |||||||| ||||||| ||||| | || || ||||| | Sbjct 3796 GGTCGCTGATCCAGCGAAGAGCCCAGTCGGCCTTCTCCTTGACGACGGGGATTGTCTCGA 3855 Query 48363 TGGCCCGGAAGAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGT---AGTGAGCAGCT 48419 || ||||| || || || | | || | ||||| |||||||| Sbjct 3856 CAGCGTCAAAGAGGAACTCGCGCTGCTCGGGCTCGCGGATGTAGGTGTCGATGAGCAGC- 3914 Query 48420 TTGCGTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGG 48479 | ||| |||| ||| | ||||| || ||||||||| || |||||| | | Sbjct 3915 --GAGTAGGTCTCGCTGTGGATGTTCTCCATCATGATCTGGAAACCATAGAAGCATCGAG 3972 Query 48480 CCTCAAACACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCAT 48539 |||| ||||||| || | | ||| | ||| | || ||||| ||||| || || | Sbjct 3973 CCTCGGCGGCCTGCACCTCGGAGCTGAAACGCTCGACAAGGTTCTCGTTGACGATACCGT 4032 Query 48540 CTGAAGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAG 48599 | ||||| || |||||||| ||||| || | ||| || ||||||||||| | || Sbjct 4033 CGGAAGCGGCGAAGAAGGCGAGGACGTGGGAGATGAAGTGACGCTCGTTGTGATTCAGCT 4092 Query 48600 CATT---CCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACG 48656 || ||| | || | || ||| |||||| | || || | ||||||||||| | Sbjct 4093 TGTTGTCCCAATCGTGAAGATCCTTGGACAGGTCAATCTCCTCGGCGGTCCAGAAGGAAG 4152 Query 48657 CGAGTGCTTTTTTGTACAT 48675 | || || |||||||| Sbjct 4153 CCTCAGCCTTCTTGTACAT 4171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931529330040320