Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20esculenta_20[genbank_20GCA_5F000819925.1_202015-01-16] 298 sequences; 20,196,985 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq79 340 3e-88 seq236 181 2e-40 >seq79 Length=472637 Score = 340 bits (376), Expect = 3e-88 Identities = 879/1322 (66%), Gaps = 37/1322 (3%) Strand=Plus/Plus Query 221370 CGTACGACTCGTAGGGACCGTACAGTTCGGCCTGGGCGCAAGACTGCGTCAGGGCAGCGT 221429 |||||| |||||| | |||| | || ||| | |||| || || || ||||||| Sbjct 420303 CGTACGTCTCGTACGTGCCGTGCTCTTGAGCCAGCTCGCACGATCGCTCGAGCGCAGCGT 420362 Query 221430 GGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGAGAAGTGAAGGGCA 221489 |||| || |||||||||||| | ||| |||| |||||||| || ||| | | Sbjct 420363 GGTAAATAGTCTCAAAGATCTGCACGTTAAGTCGGCGAGCCTCGGGCGACTCGAACG-CG 420421 Query 221490 TA-CGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGATGGGCCTGTGT 221548 || | || ||| ||| |||| || || ||||| || |||||||||||||| | ||| Sbjct 420422 TAGCCCATGATCATGAAGGCGTCAGCAAGACCCTGAACACCGATACCGATGGGTCGGTGG 420481 Query 221549 CTCCTGTTGGAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTCGATCAGATTGTTG 221608 | | ||||||| | ||||| ||||| || |||||| |||||| | |||||| Sbjct 420482 CGCATGTTGGATCTGCGAGCTTCCTCGACGGGGTAGTAGTTGATGTCGATGATCTTGTTG 420541 Query 221609 AGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATTGAACACCAACTCG 221668 |||||| |||| | || | |||| | ||| || | || ||| Sbjct 420542 AGGTTCTTGCAGATGGCCTTGGCAACCTTG---------TGGAGACG---CTTAAAGTCG 420589 Query 221669 C-CGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGCCAGGTTACACAC 221727 || | | ||| |||| | | ||| | | || |||| ||| ||||| ||||| Sbjct 420590 TACGTCTTGGTGACCGGGT-CGATAAACGTGGGCAGCGCAATCGAGGCAAGGTTGCACAC 420648 Query 221728 GGCCACCTCGTCCTTGTTGG--TATACTGTATGATCTCTGTACAGAGGTTGCTGCACTTG 221785 || |||||||| || | | |||| |||||||| ||||| |||||| ||||||| Sbjct 420649 AGCGACCTCGTC--TGGCGCACTGTACTCGATGATCTCGGTACACAGGTTGGAGCACTTG 420706 Query 221786 ATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCATAAAG 221845 ||||| || |||| || || || |||||| |||||||| ||||||||||| || || Sbjct 420707 ATGGTGCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCAGCATCCTTGTAGAGGATGAAC 420766 Query 221846 GGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTCTG-GCGCTCAC 221904 || |||||||| ||| | | | || || || |||||| | |||| || | || Sbjct 420767 GGGTTACCAGTCTCGGTCTGCGACTCGAGGATGGCGTACCAGAGCT-TCTGAGCCTTGAC 420825 Query 221905 CGTCCTCTTGACTGCACCCTCGGTCTTTTCATACCCGGTATAGAGCATGTCAAACTTTTC 221964 || | |||| |||||||| || | | || ||||| ||||||| || Sbjct 420826 GGTGCGCTTGGAACGACCCTCGGCCTCGTAGCGCTCG---TAGAGGCGCTCAAACTCGTC 420882 Query 221965 ACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGACTCCAGTGCTTGTT 222024 ||| || ||| | || || || ||| | ||| ||||| || ||||| ||| Sbjct 420883 ACCATAGCAGTCGGCAAGACCGGGGCACTCGTTGGGGCACATGAGCGACCAGTCTCCGTT 420942 Query 222025 GTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGT 222084 | | |||||||| |||||||||||| || | ||| || || | ||||| |||| || Sbjct 420943 CTGCTCGACCCTCTTCATGAAGAGGTCGGGAACCCAGAGTGCGTAGAAGAGCTCTCGGGC 421002 Query 222085 CCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTG 222144 ||| ||||||| |||| ||| || | || || | ||||| || | || | ||| Sbjct 421003 ACGCACCTCCTCCTTACCGTGGTTCTTGCGGAGGTCGAGGAACTCGAACACATCCGAGTG 421062 Query 222145 CCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCCTGATCCACCAT 222204 ||| ||||| | |||| ||| | || ||||| ||||||||||||||||| || || Sbjct 421063 CCAAGGCTCAATGTAGATGGCAAAGGCACCGGGACGCTTGTTGCCACCCTGGTCGACGTA 421122 Query 222205 CCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGGATCGACCGTTGGT 222264 | || |||||||| |||||| | || || | |||||| ||||||||| Sbjct 421123 GCGAGCCGTGTTGTTGAAGACGCGAAGCATGGGCACGATACCGTTGCTGACACCGTTGGT 421182 Query 222265 GCCCTTAATGTACGCACCGCCGGCCCTCAGGT-TACTGGCAG-ACATGCCGATACCACCG 222322 ||| |||||||| | | | |||| | | | ||| | | |||||||||||| Sbjct 421183 GCCGGCAATGTACGAGC--CAGTACCTCGGATGCAGTGGATGTTGAGACCGATACCACCG 421240 Query 222323 GCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGCCCTCCATAGAGTCC 222382 || || ||||||||||| ||| ||||||| ||||| |||||| || || ||||| Sbjct 421241 GCAGTCTTGGAGATCATGGCACAGGTCTTGAGGGTGTCGTAGATGCCATCGATCGAGTCG 421300 Query 222383 TCCTTGACGTTCAGCAGAAAACAAGACGACATCT-GAGATTTGGTGGAACAGGCGTTAAA 222441 ||||| | | | | || ||||| ||||| | || | | | |||| | | |||||| || Sbjct 421301 TCCTTCATGGTGACGAGGAAACACGACGAGAGCTGGGGGTGTGGT-GTCCCGGCGTTGAA 421359 Query 222442 CAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGATCGTACGTCTCTACGAC 222501 || ||||| ||||| |||||| | | ||||| || | ||| || || | | | Sbjct 421360 GAGAGTGGGCGAAGCGTGGGTAAAGCACTTCTGCGACATGAGGTTGTAGGTTTCGATGGC 421419 Query 222502 TCTGGCGATGTTGTCCCCGTGAATCTGCATGGCGCATCTCATGTACATGTACTGGGGCCT 222561 || |||||| | ||||| || | |||| | |||| ||||| |||||| | Sbjct 421420 GCTCTCGATGTCCTGGCCGTGGATACCGACGGCGACACGCATGAGCATGTGCTGGGGTCG 421479 Query 222562 CTC---CACAGGACCCTTGGAGCTGGAGAGCAGGTACGATTTTTCCAGAGTCTTGAACCC 222618 ||| ||| || || | || ||| ||||| || || ||||||||||| || Sbjct 421480 CTCGGTCACCTTGCCGTT---GATGCGGAGGAGGTAGGAACGCTCGAGAGTCTTGAAGCC 421536 Query 222619 AAAGTAGTTGAGGTCAAAGTCTCTGCCGTGAACCACGGCGGCGTCCAGCTCCGACTTGTG 222678 |||| ||||| || ||||| | ||| | | ||| | ||| |||| |||||| Sbjct 421537 AAAGAAGTTGTAGTGGAAGTCGCGCTCGTAGATGATGGCCGAGTCGAGCTGGTCCTTGTG 421596 Query 222679 CT 222680 || Sbjct 421597 CT 421598 >seq236 Length=132806 Score = 181 bits (200), Expect = 2e-40 Identities = 434/650 (67%), Gaps = 26/650 (4%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||| | ||||||||||||||| | || |||||||||||| |||||||| ||| Sbjct 4180 ATCTGGCAAATGTACAAGAAGGCTGAGGCTTCCTTCTGGACCGCCGAGGAGATTGACCTG 4121 Query 25537 GCCAAGGACATGGACGGCTGGTAC-----GCTCTATCCAAAGACGAGCAGCATTTTCTCA 25591 ||||||| | ||| ||| || ||| ||| || ||||| || || || Sbjct 4120 TCCAAGGATCTTCACGATTGGGACAACAAGCTGAATCACAA--CGAGCGTCACTTCATCT 4063 Query 25592 AGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGA 25651 |||| | || ||||| || || || || ||||| || |||||||| || |||| Sbjct 4062 CCCACGTCCTCGCCTTCTTCGCCGCTTCCGACGGTATCGTCAACGAGAACCTTGTCGAGC 4003 Query 25652 GATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCA 25711 | |||| | || |||||| || ||||| || ||||| ||||||||||| | Sbjct 4002 GTTTCAGCTCCGAGGTGCAGGCCGCCGAGGCTCGATGCTTCTATGGTTTCCAGATCATGA 3943 Query 25712 TCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTACAGACG 25768 | || || | ||| ||| || | ||| || || || ||||| || Sbjct 3942 TGGAGAACATCCACAGCGAGACCTACTC---GCTGCTCATCGACACCTACATCCGCGAGC 3886 Query 25769 TCG--CCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAA 25826 || | | | ||| || || |||| || ||||| || ||| | ||||| ||| Sbjct 3885 CCGAGCAGCGCGAGTTC--CTCTTTGACGCTGTCGAGACAATCCCCGTCGTCAAGGAGAA 3828 Query 25827 GGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGT 25886 ||| ||||| | ||||||| | || ||||||| || | |||||| || || Sbjct 3827 GGCCGACTGGGCTCTTCGCTGGATCAGCGACCGACGCGCTACCTTCGCCGAGCGTCTCGT 3768 Query 25887 AGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCT 25946 |||||||| || || ||||||||||| ||| || || || || ||||||||||||| Sbjct 3767 TGCCTTTGCCGCCGTTGAGGGCATCTTCTTCTCTGGCTCCTTCGCCTCCATCTTCTGGCT 3708 Query 25947 CAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGA 26006 |||| || || |||||||| || ||| |||||||| |||||| | ||||| Sbjct 3707 CAAGAAGCGTGGTCTTATGCCCGGTCTCACCTTCTCCAACGAACTCATCTCGCGTGACGA 3648 Query 26007 GGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTC 26066 ||||||||||| || ||||| ||||| |||| || ||||| ||| | || | | Sbjct 3647 GGGTCTCCACACCGACTTTGCTTGCCTCCTCTTCA---GCCAC---CTCAAGAAGCGCGC 3594 Query 26067 TCA---AGAGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGA 26113 || || ||||| || ||||||| || || || |||||||||| Sbjct 3593 ACACCCTGACACCGTGCTCAAGATCATCACCGAAGCGGTTGAGATCGAGA 3544 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928841340053120