Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20esculenta_20[genbank_20GCA_5F000819925.1_202015-01-16] 298 sequences; 20,196,985 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq112 107 1e-17 seq226 95.1 8e-14 >seq112 Length=645977 Score = 107 bits (118), Expect = 1e-17 Identities = 358/551 (65%), Gaps = 6/551 (1%) Strand=Plus/Plus Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388 || |||||||| ||| | || ||||||||| ||||| || || |||||||| | Sbjct 463625 GCCATTGGTATCGATCTTGGTACTACTTACTCCTGTGTCGCCGTCTGGCAAAACGACCGT 463684 Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448 || || | || || || ||||| ||||| | || || || ||||||||| | || || Sbjct 463685 GTCGAGGTCATCGCTAACGACCAGGGTAACCGCACCACCCCCTCATATGTTGCCTTCACC 463744 Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAAT 474508 || | || | ||| || ||||||||||| || | || | || || || || Sbjct 463745 GACTCGGAGCGTCTCATCGGAGATGCTGCCAAGAACCAGGTCGCCATGAACCCCCACAAC 463804 Query 474509 ACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCT 474568 || | || ||||| || | |||| |||||||| || || || || || || || Sbjct 463805 ACCGTCTTCGATGCCAAGCGTCTGATCGGTCGTAAGTTCGACGACGCCGAGGTTCAGTCC 463864 Query 474569 GATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATAT-AGAAGC 474627 |||||| || ||||| || |||| | || ||||| || || | || | | | Sbjct 463865 GATATGAAGCACTGGCCCTTCGAGGTTACCTCGGTCGGTGGCAAGCCCCAGATCCGCATC 463924 Query 474628 -AATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAG 474686 | |||| | ||||| | || || | || || | || ||||| |||||| | Sbjct 463925 GAGTACAAG--GGTGAGAAGAAGACCTTCACTCCCGAGGAGATCTCTTCCATGGTTCTCC 463982 Query 474687 CCAAAATGAAACAAACCG-CGAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATT 474745 ||| ||| | |||| |||| | || ||||| || | ||||| || | Sbjct 463983 TCAAGATGCGTGAGACCGCCGAG-GCCTACCTTGGTGGCACCGTCAAGGATGCTGTCGTC 464041 Query 474746 ACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATT 474805 || || || || || ||||| || || || || || || || || ||||| || | || Sbjct 464042 ACCGTCCCTGCCTACTTTAACGACTCGCAGCGACAGGCTACCAAGGATGCCGGTATCATC 464101 Query 474806 GCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGT 474865 | || || ||||| | || || || || || || || || ||||| |||| || ||| Sbjct 464102 TCGGGCCTCAATGTGATGCGAATCATCAACGAGCCCACTGCCGCCGCCATTGCCTACGGT 464161 Query 474866 CTTGATAAGAA 474876 || || ||||| Sbjct 464162 CTCGACAAGAA 464172 >seq226 Length=271753 Score = 95.1 bits (104), Expect = 8e-14 Identities = 93/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 480593 ATTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTG 480652 ||| || |||| || || | | ||| || ||||||||||| || ||||| ||||| || Sbjct 170569 ATTGTAGTCAGACAGGGTGCGGCCATCCTCGAGTTGCTTTCCGGCGAAAATGAGACGCTG 170510 Query 480653 TTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATC 480712 || ||||||||||| || ||||| ||||| ||||| ||||||| ||||||||||| Sbjct 170509 CTGGTCAGGAGGAATACCCTCCTTATCTTGGATCTTGGCTTTGACATTGTCAATAGTATC 170450 Score = 95.1 bits (104), Expect = 8e-14 Identities = 118/162 (73%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| |||||||| ||||| || | || || || || || || || || | || || Sbjct 171295 ACGGAGACGGAGCACAAGGTGCAAGGTGCTCTCCTTCTGAATGTTGTAGTCCGAGAGCGT 171236 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | | ||| || || |||||||| ||||| || |||||||| || ||||| ||||| || Sbjct 171235 GCGGCCATCCTCGAGCTGCTTTCCTGCAAAGATGAGACGTTGCTGGTCAGGGGGAATACC 171176 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATC 480712 ||||||||| |||||||| |||||| ||||| || || Sbjct 171175 TTCCTTGTCCTGAATCTTGGCCTTGACATTGTCAATGGTGTC 171134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268166417334104