Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20esculenta_20[genbank_20GCA_5F000819925.1_202015-01-16] 298 sequences; 20,196,985 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq79 170 2e-37 seq236 109 7e-19 >seq79 Length=472637 Score = 170 bits (188), Expect = 2e-37 Identities = 538/819 (66%), Gaps = 25/819 (3%) Strand=Plus/Minus Query 75212 CCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTC 75271 || ||| ||||| ||||||| ||||| |||| |||||||| | ||||| || | | Sbjct 421476 CCCCAGCACATGCTCATGCGTGTCGCCGTCGGTATCCACGGCCAGGACATCGAGAGCGCC 421417 Query 75272 TTGGAGACATACGACAAGATGTCCCAAGGTATG-TTCATTCACGCAACACCAACCCTCTT 75330 | || || ||| || ||||| || | || || | ||||| | || || ||||| Sbjct 421416 ATCGAAACCTACAACCTCATGTCGCA-GAAGTGCTTTACCCACGCTTCGCCCACTCTCTT 421358 Query 75331 CAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 75390 ||| || || |||||| || ||| | || || ||||| || ||| ||||| || Sbjct 421357 CAACGCCGGGACACCACACCCCCAGCTCTCGTCGTGTTTCCTCGTCACCATGAAGGACGA 421298 Query 75391 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 75450 ||| ||| | || ||||| | || || | | ||||| ||||| ||| || || Sbjct 421297 CTCGATCGATGGCATCTACGACACCCTCAAGACCTGTGCCATGATCTCCAAGACTGCCGG 421238 Query 75451 GGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTA--TTCGGGGGACA 75508 ||||| || | ||||||| | ||| | | |||||| || || || Sbjct 421237 TGGTATCGGTCTCAACATCCACTGCATCCGAGGTACTGG--CTCGTACATTGCCGGCACC 421180 Query 75509 AATGGTCAATCAG--ATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCT 75566 || ||| |||| | ||||| | || ||||||||||| || ||| ||| || |||| Sbjct 421179 AACGGTG--TCAGCAACGGTATCGTGCCCATGCTTCGCGTCTTCAACAACACGGCTCGCT 421122 Query 75567 ATGTAAATCAAGCGGG------GCGTCGCAAGGGGTCCATCGCGGTCTACTTGGAACCAT 75620 | || | || | || ||||| | || || | || ||||| | || || | Sbjct 421121 ACGTCGACCAGGGTGGCAACAAGCGTCCC---GGTGCCTTTGCCATCTACATTGAGCCTT 421065 Query 75621 GGCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTC 75680 |||| | ||| | | |||||||| || | || ||||| ||| | || |||| | Sbjct 421064 GGCACTCGGATGTGTTCGAGTTCCTCGACCTCCGCAAGAACCACGGTAAGGAGGAGGTGC 421005 Query 75681 GGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGG 75740 | |||| ||||| | | || ||| |||| ||||| ||||||||| |||| ||| Sbjct 421004 GTGCCCGAGAGCTCTTCTACGCACTCTGGGTTCCCGACCTCTTCATGAAGAGGGTCGAGC 420945 Query 75741 AGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGAC-GCGGTG 75799 || || | ||||| || | || || || || || ||||| ||||| || || Sbjct 420944 AGAACGGAGACTGGTCGCTCATGTGCCCCAACGAGTGCCCCGGTCTTGCCGACTGCTATG 420885 Query 75800 GGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCCAATGCG-AC 75858 | ||| |||||||| ||||||| || || | |||||| | |||| ||| || Sbjct 420884 G-TGACGAGTTTGAGCGCCTCTACGAGCGCTACGAGGCCGAGGGTCGTTCCAA-GCGCAC 420827 Query 75859 TGTACCAGCCGCCGATGTT-TGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACAC 75917 || | || | | || | | ||| | || || ||| | || ||||| |||||||| | | Sbjct 420826 CGT-CAAGGCTCAGAAGCTCTGGTACGCCATCCTCGAGTCGCAGACCGAGACTGGTAACC 420768 Query 75918 CATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAA 75977 | | || || |||||||||||| ||| ||||| ||||| ||||| | || || | Sbjct 420767 CGTTCATCCTCTACAAGGATGCTGCCAACCGCAAGAGCAACCAGAAGAACCTCGGCACCA 420708 Query 75978 TCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACA 76016 ||||| |||| || || || || || || | ||||||| Sbjct 420707 TCAAGTGCTCCAACCTGTGTACCGAGATCATCGAGTACA 420669 >seq236 Length=132806 Score = 109 bits (120), Expect = 7e-19 Identities = 124/165 (75%), Gaps = 1/165 (1%) Strand=Plus/Minus Query 65065 CGCT-CCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGG 65123 |||| ||||||||||||| || |||| ||||| || ||||| ||||||||||| || Sbjct 3791 CGCTACCTTCGCCGAGCGTCTCGTTGCCTTTGCCGCCGTTGAGGGCATCTTCTTCTCTGG 3732 Query 65124 GTCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTC 65183 || ||| | | || | ||| | |||||||| ||||| ||||| || || |||||| Sbjct 3731 CTCCTTCGCCTCCATCTTCTGGCTCAAGAAGCGTGGTCTTATGCCCGGTCTCACCTTCTC 3672 Query 65184 AAATGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGC 65228 || ||||| || || || || |||||||||||| || ||||| Sbjct 3671 CAACGAACTCATCTCGCGTGACGAGGGTCTCCACACCGACTTTGC 3627 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596567377778240