Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20esculenta_20[genbank_20GCA_5F000819925.1_202015-01-16] 298 sequences; 20,196,985 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq237 109 2e-18 seq236 95.1 4e-14 >seq237 Length=123716 Score = 109 bits (120), Expect = 2e-18 Identities = 238/354 (67%), Gaps = 2/354 (1%) Strand=Plus/Plus Query 302491 TCAATTCCGTCATCGCCGTAGGAATACTGAATGATTTTGTTCTTGTTATTTCTTACGGTC 302550 ||||| ||||| || ||||| | |||| |||| |||||| | |||| ||||| Sbjct 20680 TCAATACCGTCCTCACCGTAAGCGAACTGGATGACGTTGTTCGTAGAGTTTCGAACGGTA 20739 Query 302551 ATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCA 302610 || |||| | ||| | ||||| | ||||| | ||||||||||| ||||| Sbjct 20740 CCGTCGTAACAGACCATGACATCTTCGAGTGCCTTGACCAGCCGACGCTGAATGTAACCC 20799 Query 302611 GTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAG 302670 || | || || || || |||||||| ||||| |||||||| ||||||| |||||| Sbjct 20800 GTCTCGGCAGTCTTGACGGCAGTATCAATAAGACCCTCACGACCAGCCATAGCGTGGAAG 20859 Query 302671 AATAGCTCTTCCGGTCGT-AGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTC 302729 || | ||||| || || || || | || | ||| |||| ||||| || || ||| Sbjct 20860 AAGAACTCTT-GGGCAGTAAGACCTCGAAGGTACGAGTTCTCGACGAAGCCTCGGCTCTC 20918 Query 302730 GGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGAT 302789 ||| | | ||| |||||| || || || || | | || | ||| | || || Sbjct 20919 GGGAGTAAAGTCATCCTTGGTGAAATGAGGAAGACTGCGGTGGCGGAAACCGAAGGGAAT 20978 Query 302790 ACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATT 302843 |||||| || || ||| || ||||| | || | | ||||||||| || || Sbjct 20979 ACGCTTCCCCTCGACGGATTGTTGTCCGACACAAGCAGACATCTGCGAGATGTT 21032 >seq236 Length=132806 Score = 95.1 bits (104), Expect = 4e-14 Identities = 144/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 133452 AGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGCGTGCGAGTTTTGCTACTCGTC 133511 |||| | ||||||||| || |||||| ||| || || | || || |||| Sbjct 3831 AGAAGGCCGACTGGGCTCTTCGCTGGATCAGCGACCGACGCGCTACCTTCGCCGAGCGTC 3772 Query 133512 TCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGTTCTGCTCTATTTTTT 133571 ||||||| ||||| | || |||||||| || ||| ||| | ||| ||| || || | Sbjct 3771 TCGTTGCCTTTGCCGCCGTTGAGGGCATCTTCTTCTCTGGCTCCTTCGCCTCCATCTTCT 3712 Query 133572 GGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACGAACTTATTTCAAGGG 133631 |||| || ||||||||| || | || || || || || |||||||| || || | | Sbjct 3711 GGCTCAAGAAGCGTGGTCTTATGCCCGGTCTCACCTTCTCCAACGAACTCATCTCGCGTG 3652 Query 133632 ACGAGGCACTTCACACCGAATTTGC 133656 |||||| || |||||||| ||||| Sbjct 3651 ACGAGGGTCTCCACACCGACTTTGC 3627 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471811980416426