Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20esculenta_20[genbank_20GCA_5F000819925.1_202015-01-16] 298 sequences; 20,196,985 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq79 206 3e-47 seq236 149 8e-30 seq254 127 2e-23 seq57 93.3 5e-13 seq277 87.8 2e-11 seq251 87.8 2e-11 >seq79 Length=472637 Score = 206 bits (228), Expect = 3e-47 Identities = 338/489 (69%), Gaps = 15/489 (3%) Strand=Plus/Plus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 ||||||||||||||| ||||||| ||| |||||||| ||||||||||||| |||||| Sbjct 421111 CTGGTCGACGTAGCGAGCCGTGTTGTTGAAGACGCGAAGCATGGGCACGATACCGTTGCT 421170 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184 | ||||||||||| || | ||| | ||| | | || | ||| | | || Sbjct 421171 GACACCGTTGGTGCCGGCAATGTACGAGCCAGTACCTCGGATGCAGTGGATGTTGAGACC 421230 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244 ||| || ||||| | ||||||||| | || || ||||| |||||||||||||| || Sbjct 421231 GATACCACCGGCAGTCTTGGAGATCATGGCACAGGTCTTGAGGGTGTCGTAGATGCCATC 421290 Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304 |||||||||| |||||||| ||||| || ||||||||| || ||||| | || || Sbjct 421291 GATCGAGTCGTCCTTCATGGTGACGAGGAAACACGACGAGAGCTGGGGGTGTGGTGTCCC 421350 Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364 |||||||||||| ||||||| || ||| || ||| | |||||||| || |||||| Sbjct 421351 GGCGTTGAAGAGAGTGGGCGAAGCGTGGGTAAAGCACTTCTGCGACATGAGGTTGTAGGT 421410 Query 1630365 GGCGAGCACGCGCGCCAGCGCATCGTCCACGTCGGCAAACCCATAGTGGCCGATGGCGAC 1630424 ||| ||| | | | |||| | || | | |||| |||||| Sbjct 421411 TTCGATGGCGCTCTCGA------TGTCCTGG---------CCGTGGATACCGACGGCGAC 421455 Query 1630425 GCGCATGAGCATGTACTGGGGCCGCTCGACGACGACGCCGCGCACCTTGGTCAGGTAGGA 1630484 ||||||||||||| |||||| |||||| || |||| | | |||||||| Sbjct 421456 ACGCATGAGCATGTGCTGGGGTCGCTCGGTCACCTTGCCGTTGATGCGGAGGAGGTAGGA 421515 Query 1630485 CCGGCGCATGGTCATGAGGCCAAAGTAGGAAAAGGCAAAATCGCGGTCGTGGCGGATGGC 1630544 || | ||| ||| ||||||| || || || ||||| |||| | |||||| Sbjct 421516 ACGCTCGAGAGTCTTGAAGCCAAAGAAGTTGTAGTGGAAGTCGCGCTCGTAGATGATGGC 421575 Query 1630545 GGCGTCGAG 1630553 | |||||| Sbjct 421576 CGAGTCGAG 421584 Score = 113 bits (124), Expect = 6e-19 Identities = 326/507 (64%), Gaps = 10/507 (2%) Strand=Plus/Plus Query 1628099 CGACAAACTTGGGCAGGGCCACGCTGGAAAGGTTGCAAGTCGCCACTTCCGTGGGCGACG 1628158 ||| |||| ||||||| || | || ||||||||| || || || |||| Sbjct 420609 CGATAAACGTGGGCAGCGCAATCGAGGCAAGGTTGCACACAGCGACCTCGTCTGGCGCAC 420668 Query 1628159 AAAACTGGACGATCTCGGTGCACAGGTTGGCCGACGTCGTCGTACCCAGGTTCTGCTGGT 1628218 ||| || ||||||||| |||||||||| || | | || || ||||||| ||||| Sbjct 420669 TGTACTCGATGATCTCGGTACACAGGTTGGAGCACTTGATGGTGCCGAGGTTCTTCTGGT 420728 Query 1628219 TGGTGGTCAGGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGATCTGCG 1628278 || | | ||||| | || ||||||| ||| ||| | || || |||||| |||||| Sbjct 420729 TGCTCTTGCGGTTGGCAGCATCCTTGTAGAGGATGAACGGGTTACCAGTCTCGGTCTGCG 420788 Query 1628279 CCGCGACGATGGCCGACCAGATCTGGCGCGCGGGCACGACAGTCCGCGCG---CGGCCCT 1628335 | ||| |||||| |||||| || | || | ||| || ||| | || |||| Sbjct 420789 ACTCGAGGATGGCGTACCAGAGCTTCTGAGC---CTTGACGGTGCGCTTGGAACGACCCT 420845 Query 1628336 NNNNNNNNNNNNNNNNNNNNNNNNNNTCAAAGGCCGCGCCGTAGCACTCGTGCAGGCCGG 1628395 ||||| | | || ||||| ||| || |||| Sbjct 420846 CGGCCTCGTAGCGCTCGTAGAGGCGCTCAAACTCGTCACCATAGCAGTCGGCAAGACCGG 420905 Query 1628396 GCGCCTCGGACGGACAAAAGAGCGACCAGTCGCCA--CCGGTCACCGCGCGGCGCATAAA 1628453 | |||| || || | |||||||||||| || | | || | | | | || || Sbjct 420906 GGCACTCGTTGGGGCACATGAGCGACCAGTCTCCGTTCTGCTCGACCCTCTTC--ATGAA 420963 Query 1628454 GAGGTCACACGTCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTTGCCGTG 1628513 |||||| ||| |||||||| ||||| || || || || ||||||||| ||||| Sbjct 420964 GAGGTCGGGAACCCAGAGTGCGTAGAAGAGCTCTCGGGCACGCACCTCCTCCTTACCGTG 421023 Query 1628514 GTTCTTTTTGAGGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTAGCAGGC 1628573 |||||| ||||||||| | |||| | || | |||||| ||||| | |||| ||| Sbjct 421024 GTTCTTGCGGAGGTCGAGGAACTCGAACACATCCGAGTGCCAAGGCTCAATGTAGATGGC 421083 Query 1628574 AAAGGCGCCCTTGCGCTTGCCGCCGCC 1628600 |||||| || |||||| ||| || Sbjct 421084 AAAGGCACCGGGACGCTTGTTGCCACC 421110 >seq236 Length=132806 Score = 149 bits (164), Expect = 8e-30 Identities = 209/289 (72%), Gaps = 11/289 (4%) Strand=Plus/Plus Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238 ||| ||||| || ||| | ||||||| |||| ||| |||||||| || || ||||| Sbjct 3644 ACCCTCGTCACGCGAGATGAGTTCGTTGGAGAAGGTGAGACCGGGCATAAGACCACGCTT 3703 Query 869239 CTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298 ||||||||| ||||||| | ||| ||| ||||| ||||||||||| ||||||||||| Sbjct 3704 CTTGAGCCAGAAGATGGAGGCGAAGGAGCCAGAGAAGAAGATGCCCTCAACGGCGGCAAA 3763 Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCA 869358 | | | ||| |||||||| ||||| || | | || | ||||||| | ||||| Sbjct 3764 GGCAACGAGACGCTCGGCGAAGGTAGCGCGTCGGTC---GCTGATCCAGCGAAGAGCCCA 3820 Query 869359 GTCGGCCTTTTTCCTCACCGAC-GGCACCGTGTCGATGGCGCGAAAGAGG---TGGTCCT 869414 ||||||| || |||| |||| || | || |||| ||| ||||||| | | || Sbjct 3821 GTCGGCC-TTCTCCTTGACGACGGGGATTGTCTCGACAGCGTCAAAGAGGAACTCGCGCT 3879 Query 869415 TTTCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATAGGTCTC 869463 ||| || || || ||||||||||| || ||||| |||||||| Sbjct 3880 GCTCG---GGCTCGCGGATGTAGGTGTCGATGAGCAGCGAGTAGGTCTC 3925 >seq254 Length=76900 Score = 127 bits (140), Expect = 2e-23 Identities = 274/406 (67%), Gaps = 14/406 (3%) Strand=Plus/Minus Query 18087 GGTCACCACCTTTGGCGAGTCGCACGGGGCGGGCGTCGGCTGCATCATCGACGGCGTGCC 18146 ||| ||||||| |||||||| ||| | || || ||||||||| ||||||||||||| Sbjct 9847 GGTGACCACCTACGGCGAGTCCCACTGCGCCTCGGTGGGCTGCATCGTCGACGGCGTGCC 9788 Query 18147 GCCGTGCATGCCACTGGCCGAGGCCG----ACATCCAGCCTCAGTTGGATCGGCGCCGAC 18202 || | | | || |||| ||| |||| ||| | ||| | || || || | Sbjct 9787 TCCCGGACTCGCGCT---CGAG-CCGCATCACATTCAGACGCAGCTCTCCCGCCGTCGCC 9732 Query 18203 CGGGCCAGGGCGCACTTTCCACGCCGCGCAACGAGCCCGATCGCGTCATCATCCAGTCGG 18262 | |||||| | || |||||||||| |||| || |||||| |||||||| | Sbjct 9731 CCGGCCAGTCCAACCTCACCACGCCGCGAGACGAAAAGGACCGCGTCGAGATCCAGTCCG 9672 Query 18263 GCACGGAGAACGGCCTCACGCTCGGCTCGCCCGTCGGCCTCTTTGTGGCCAACCGCGACC 18322 || |||| |||| | |||||||| | ||| ||| | | ||| ||||| ||||| Sbjct 9671 GCGTGGAGCGCGGCGTGACGCTCGGAACCCCCATCGCGATGCTCGTGCGCAACCACGACC 9612 Query 18323 AGCGGCCCGTCGACTATTCCGAC---ATGTGCAAGGTG---CCGCGGCCCTCACACGCCG 18376 |||| || |||||| ||||| | | | | | | ||||| || || ||||||| Sbjct 9611 AGCGTCCGCACGACTACACCGACGACACGCTCGATGCGTACCCGCGTCCGTCGCACGCCG 9552 Query 18377 ACTACACCTACATGGCCAAGTACGGCATCAAGGCGTCGTCGGGCGGAGGCCGGTCGTCTG 18436 |||| || || | |||||| | ||||||| ||||| || ||||| || | Sbjct 9551 ACTATACGTATCTCCAAAAGTACAACCTCAAGGCAAGCTCGGGAGGCGGCCGCAGCTCGG 9492 Query 18437 CCCGCGAGACCCTCATGCGCGTCGCCGCCGGCGCGGTCGCCGAGAA 18482 | ||||||||| || ||||| || || || ||| | ||||| || Sbjct 9491 CACGCGAGACCATCGGACGCGTGGCTGCGGGTGCGTTGGCCGAAAA 9446 Score = 120 bits (132), Expect = 4e-21 Identities = 133/174 (76%), Gaps = 5/174 (3%) Strand=Plus/Minus Query 19052 CATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAGCCGTG 19111 |||||| ||||| | || || || ||| |||||| | |||||||||||||| || Sbjct 9049 CATCGGTGGCACCATCACCTGTGTCATCCGCGGCGTGCCCTCCGGCCTCGGCGAGCCTTG 8990 Query 19112 CTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACCAAGGG 19171 ||| |||||| |||||||| |||||||||||||||||||| ||||| |||||||||| Sbjct 8989 CTTCGACAAGCTCGAGGCCAAACTCGCCCACGCCATGCTGTCCATCCCCGCCACCAAGGC 8930 Query 19172 ATTCGAGATTGGCAGCGGGTT-TGCGGGTGCGTTGGTCGCCATTGCCTCGCGCC 19224 ||||| || ||| ||| || |||| || ||||||| | |||||||| Sbjct 8929 GTTCGAAATCGGCTCCGGCTTCCGCGGCACCG-AGGTCGCC---GGCTCGCGCC 8880 >seq57 Length=374387 Score = 93.3 bits (102), Expect = 5e-13 Identities = 131/181 (72%), Gaps = 5/181 (3%) Strand=Plus/Minus Query 733091 GGGCGACAAACTGTCGTCGCGCCACGGCCAAAAGGGCACCGTGGGCAGCGTGCGCTCCAC 733150 ||||||||| | |||||||||||||||| |||||||| | |||| | | || | Sbjct 304178 GGGCGACAAGTTTGCGTCGCGCCACGGCCAGAAGGGCACGATCGGCATCACGTA-TCGGC 304120 Query 733151 CG-AGGACATGCCCTGGTCGCCGCGCGGCGGCGCCACGCCCGACATCGTGATCAACCCGC 733209 | |||||||||| | ||| | || || | || || ||||| | |||||||||| Sbjct 304119 AGGAGGACATGCCGTTCTCGGC---CGAAGGTGTGACACCGGACATTATCATCAACCCGC 304063 Query 733210 ACGCCATCCCGTCGCGCATGACCATGGGCAAGATGCTCGAGGCCCTCCTGGGCAAGGTGG 733269 |||| ||||||||||||||||| || || | || ||||| || || |||||||| Sbjct 304062 ACGCGATCCCGTCGCGCATGACGATCGGACACTTGGTCGAGTGTCTGTTGTCCAAGGTGG 304003 Query 733270 C 733270 | Sbjct 304002 C 304002 >seq277 Length=433459 Score = 87.8 bits (96), Expect = 2e-11 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||| || || ||| | | ||| ||||| || |||||||||||||| |||| || Sbjct 196664 GCTTGGATAGCTCACCGGGTAGGATGAGGCGGACAGCGGTCTGGATCTCTCGCGACGAGA 196605 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| |||||| || || || |||||| ||| ||||||| |||| | Sbjct 196604 TGGTGGACTTCTTGTTGTAGGAAGCGAGCTTCGAGGCCTCAGTGGCGATGCGCTCGAAGA 196545 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||| | ||| |||||||| | | | ||| | |||||| || || || ||| |||| Sbjct 196544 TGTCCTGGACGAACGAGTTGAGAATGGCCATGGCCTTGTTCGAAATACCAGTGTCTGGGT 196485 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 | |||||||| || || ||||||| Sbjct 196484 GAACCTGCTTAAGAACACGGTAGATG 196459 >seq251 Length=56063 Score = 87.8 bits (96), Expect = 2e-11 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 92624 CTCCTGCACCTGGAAGCGGTCGGAAAACATGTCGACGATGCGCGGGATCTTGCTCAGGCC 92683 |||||||||||| || | | | |||| | || | || | || | |||||||| ||| Sbjct 21678 CTCCTGCACCTGCAACCTGCGCGCAAACGTCTCTGCAATCCTCGCCAACTTGCTCAAGCC 21737 Query 92684 GATGATCCTGCCCGTGGGCAGGTAGCCCACGTGGGCCTTGCCCATAAAGGGCAGCAGATG 92743 ||| | | | | || | || || | ||| ||||||| | || || | || ||| Sbjct 21738 GATCACCAGACGATTTGGAATATAACCGATATGGATCTTGCCCGTGAATGGAACCATATG 21797 Query 92744 GTGCTCGCACATGGAGAAAAAGTCGACGTCGCGCACGATCACCATCTCGCCCGAGGCCTC 92803 ||| ||||||| ||||| | || || |||||||||||| ||||| ||| | | || Sbjct 21798 GTGTTCGCACAGCGAGAAGATGTGGATGTCGCGCACGATGACCATTTCGTCGTGTTCTTC 21857 Query 92804 GGCAAAGAGCGCGTCGCCGATGGCCTCGGCCAG 92836 | |||||| ||| | | ||||| | |||| ||| Sbjct 21858 GTCAAAGATCGCATTGGCGATGACGTCGGACAG 21890 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107114744724466