Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20esculenta_20[genbank_20GCA_5F000819925.1_202015-01-16] 298 sequences; 20,196,985 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq79 215 5e-51 seq226 107 2e-18 seq1 98.7 9e-16 >seq79 Length=472637 Score = 215 bits (238), Expect = 5e-51 Identities = 1200/1881 (64%), Gaps = 72/1881 (4%) Strand=Plus/Plus Query 138163 GTAAACTTTATGGCATCAGCGGCTGGTTTCGTTCTCAGATAATACATTCCCGTTTTTAAC 138222 ||||||| ||||| | || || || || | ||| ||||| | || || || | | Sbjct 419720 GTAAACTGGATGGCGCTCGATGCGGGCTTGGTACGCAGGTAATAGGTACCGGTCTTGAGC 419779 Query 138223 CCATTTTCCCAGGCGTACATGTGTATCGAAGTGAGTAACGCGTAAGTCGGTTTCGCCAGA 138282 || || | |||| |||| | ||| || ||||| || | | || || || || Sbjct 419780 CCCTTCTTCCAGCCGTAAAAGTGCATTGAAGTAAGCTGGCCAAAGGTGGGAGCCGAGAGG 419839 Query 138283 AATATGTTAAACGATTGACTCTGATCGATGAAAGCGCCTCGATCAATGGCCATGTTAATT 138342 ||||| | ||| || ||| |||||| |||||||| || |||||||| || Sbjct 419840 TGGATGTTGAGCGACTGTGACTGGCAGATGAAGGCGCCTCGGTCGGCGGCCATGTCGATG 419899 Query 138343 AAA---TTTTTACTTTTCATCTCCCACACGGTCTTGTATAGAT-CACGAATATGTCGCGG 138398 | |||| || |||||||||||||||||||| || | | || |||| || Sbjct 419900 ATGGCCTTTTGGCTG---ATCTCCCACACGGTCTTGTAAAGCTTCTTGATGCGGTCG-GG 419955 Query 138399 TATTGTTGCAATATTTTGAAT---GCTCCCGTTGGCCGCAATGATGCGATTTCTCATGTC 138455 || | | ||| || || || |||| ||| |||||||| || |||| Sbjct 419956 AATACCGGGCACATTCTGGATCGAGCCACCGTGGGCG---ATGATGCGGTTCTTCATCGT 420012 Query 138456 ATCGTTGTACAGATTCAACTTGATCAAG-TCGTTTATCAGATATCTGTTTATGACCTGAA 138514 ||||| ||||| | || || |||| ||| | || | ||| | ||||| | Sbjct 420013 GTCGTTCCACAGACCCTGCTCGA-CAAGCTCGCGGAGCAACCAGGGGTTAACCACCTGGA 420071 Query 138515 ATTCACCGGCCAATACTCGACGAACGTAAATGTTGTTGGTGAAAGGCTCAAACGATTCGT 138574 | || ||||| | || || || ||| |||||| ||| | |||||||| | |||| Sbjct 420072 ACTCTCCGGCGAGCACACGGCGCGAGTAGATGTTGGATGTGTACGGCTCAAAGCACTCGT 420131 Query 138575 TGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCATGTACGCCACCAAAAGAGAATTCC 138634 || || ||||||||| ||| | ||||| |||||| || | | | || || | Sbjct 420132 TGAAGCCGAGAATCTGACTCGTCGAGGCGGTAGGCATGGGGGCGAGGAGCAAGGAGTTGC 420191 Query 138635 GTAAACCGTGAAGCTTG--ATTCGTT-CCTTGAGCGACGACCAGTCCCACAAATCGCTAG 138691 | | |||||| |||| | || | |||||||| | ||||||||||| || | Sbjct 420192 GCAGACCGTG---CTTGGCAATCTTGGCCTTGAGCTCAGCCCAGTCCCACAGGTCCGATG 420248 Query 138692 GTTTTTTGTTCCACATATCGTACTGTAACATTCCCAAACTTGCGGGACTGCCTTCGTACG 138751 | | |||||| || ||||| | | ||| || || ||| |||||| Sbjct 420249 GGGTGACACCCCACATGTCATACTGCAGCTCACCCTGCGAAGCAGGCGAGCCGGCGTACG 420308 Query 138752 AATCGTATACACCAAACTCTTGCGCCAACTCGTT-GCTCGCCTCGAGCGCACCATAGTAA 138810 ||||| || |||||| |||| |||| | |||| ||||||||| | | |||| Sbjct 420309 TCTCGTACGTGCCGTGCTCTTGAGCCAGCTCGCACGATCGC-TCGAGCGCAGCGTGGTAA 420367 Query 138811 ATAGTTTCGGCAATCTGCTGATTGAGCAATCGGGCCTCGGCGCTCTCGTACGGCATGCGG 138870 ||||| || |||||| || || || ||||||| |||| ||| || Sbjct 420368 ATAGTCTCAAAGATCTGCACGTTAAGTCGGCGAGCCTCGGGCGACTCGAACGCGTAGCCC 420427 Query 138871 AGCATCGTGAACGCGTCGGCCAGCCCTTGCACGCCCACTCCGACAGGGCGATGGCGCAGA 138930 | ||| |||| ||||| || || || || || || | |||| || || ||||||| Sbjct 420428 ATGATCATGAAGGCGTCAGCAAGACCCTGAACACCGATACCGATGGGTCGGTGGCGCATG 420487 Query 138931 TTTGACGCTTTTGCG-GCTTC---GATAGGATAATAGTTTACATCGATGATTTTGTTTAA 138986 || || | |||| ||||| || || || ||||| | |||||||| ||||| | Sbjct 420488 TTGGA----TCTGCGAGCTTCCTCGACGGGGTAGTAGTTGATGTCGATGATCTTGTTGAG 420543 Query 138987 ATT-TCGCACGACCACCTTAGTCGTATGCTTTAATCGTTCAAAATCGTATGTGCCCCCGT 139045 || | ||| || |||| | | | | || | ||| ||||| || | Sbjct 420544 GTTCTTGCA-GATGGCCTTGGCAACCTTGTGGAGACGCTTAAAGTCGTACGTC------T 420596 Query 139046 TGTCGTCGACGACGTCGACAAATTTGTTGACACAAATCGAGGCTATGTTGCACACCGCCA 139105 || || ||| ||||| ||| || | ||||||||| | ||||||||| || | Sbjct 420597 TG--GT-GACCGGGTCGATAAACGTGGGCAGCGCAATCGAGGCAAGGTTGCACACAGCGA 420653 Query 139106 CTTCGTCGGGGTCGCTGTATTCGACAATTTCGGCACACAAATTACTACACTTGATCGTAC 139165 | ||||| || | ||||| |||| || |||| ||||| || |||||||| || | Sbjct 420654 CCTCGTCTGGCGCACTGTACTCGATGATCTCGGTACACAGGTTGGAGCACTTGATGGTGC 420713 Query 139166 CTAAATTTTGTTGATTGCTTTTTCGGTTACAAGCATCTTTGTAAAGCATATACGGTGTGC 139225 | | || | || ||||| || ||||| |||||| ||||| || || |||| | | Sbjct 420714 CGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCAGCATCCTTGTAGAGGATGAACGGGTTAC 420773 Query 139226 CAGTTTCCACTTGTGTCTCTATAATGAATTTGAACAAGTCCCTAGC-TTGTATTTGACGC 139284 |||| || || | ||| | ||| | | | | | ||| ||| || ||| Sbjct 420774 CAGTCTCGGTCTGCGACTCGAGGATGGCGTACCAGAGCTTCTGAGCCTTGACGGTG-CGC 420832 Query 139285 ACGTAAAGTTCGTCGCGCTCGTACTTTTCGTAGAGTTCGTCGAA-TCGTTCACCGTAGGC 139343 | || | | ||| |||||| |||||||| || || |||| |||| ||| Sbjct 420833 TTGGAACGACCCTCGGCCTCGTAGCGCTCGTAGAGGCGCTCAAACTCGT-CACCATAGCA 420891 Query 139344 GTCAGAAAGATCGCGACACTTGTCAGGACACATGAGCGACCATACGCCGTTCGCCTTGAC 139403 ||| | |||| || | |||| || || |||||||||||||| | |||||| || ||| Sbjct 420892 GTCGGCAAGACCGGGGCACTCGTTGGGGCACATGAGCGACCAGTCTCCGTTCTGCTCGAC 420951 Query 139404 GCGCCTCATGAACAGATCCGGAATCCACAAAGCGAACAGCAAATCGCGCGCCTTCTTATC 139463 | | ||||||| || || |||| ||| | ||| | | | || || || | || Sbjct 420952 CCTCTTCATGAAGAGGTCGGGAACCCAGAGTGCGTAGAAGAGCTCTCGGGCACGCACCTC 421011 Query 139464 TTCCGAACCCATGTTACGTTTC--ATGTTAAGGAAATCAAAAACGTCAGCGTGCCATGGT 139521 ||| ||| ||| || | | || ||||| || || || || | |||||| || Sbjct 421012 CTCCTTACCGTGGTTC--TTGCGGAGGTCGAGGAACTCGAACACATCCGAGTGCCAAGGC 421069 Query 139522 TCCAGATAGATGGCCATTGCGCCTTTCCGTTTG---CCACCTTGATCGACGTGTCGTACA 139578 || | |||||||| | || || || ||| ||||| || ||||||| || | Sbjct 421070 TCAATGTAGATGGCAAAGGCACCGGGACGCTTGTTGCCACCCTGGTCGACGTAGCGAGCC 421129 Query 139579 GCATTATTGAATACGCGCAACATCGGCTCCAGACCGCTCGCTGTT-CCGTTGGTGCT--- 139634 | || ||||| ||||| | ||| ||| | | |||| | |||| |||||||||| Sbjct 421130 GTGTTGTTGAAGACGCGAAGCATGGGCACGATACCGTT-GCTGACACCGTTGGTGCCGGC 421188 Query 139635 -ACGGATGGGACTGTTGCGAGCTCGGACGTCATGTACATTGATGCCGATTCCGCCGCCAA 139693 | | | | | | || | |||||| | || | |||| ||||| || ||| || Sbjct 421189 AATGTACGAGCCAGT----ACCTCGGATGCAGTGGATGTTGAGACCGATACCACCGGCAG 421244 Query 139694 ATTTGGATATTAAAACGCAA-TCGCGTAATGTCTCGTATATACCTCTTATGCTGTCGTCC 139752 ||||| || | | || || | | || ||||| || || || ||||||| Sbjct 421245 TCTTGGAGATCATGGCACAGGTCTTG-AGGGTGTCGTAGATGCCATCGATCGAGTCGTCC 421303 Query 139753 TGCATCGTGACCAGAAAGCATGACGAAAGTTGCGGTAGTTTCGTGCCGGCTGCAAACAGA 139812 | ||| ||||| || || || ||||| || || || || || ||||| || ||| Sbjct 421304 TTCATGGTGACGAGGAAACACGACGAGAGCTGGGGGTGTGGTGTCCCGGCGTTGAAGAGA 421363 Query 139813 GTAGGACTCGCGTGCGTGAA-CATTTGTTTCGACATCAATTCGTACGTTTCGATGGCGCT 139871 || || ||||| || || || || | |||||| | | ||| |||||||||||||| Sbjct 421364 GTGGGCGAAGCGTGGGTAAAGCACTTCTG-CGACATGAGGTTGTAGGTTTCGATGGCGCT 421422 Query 139872 CACAATATCCCTTCCGTGGATACCGACAGAGACTCGCATCAGCATATGTTGGATCCGTTC 139931 | | || ||| |||||||||||||| | ||| ||||| ||||| || ||| || || Sbjct 421423 CTCGATGTCCTGGCCGTGGATACCGACGGCGACACGCATGAGCATGTGCTGGGGTCGCTC 421482 Query 139932 GGCCACCGCGCCCTCGAtttttttCAGATA--ACCGTTCTCTAGGGTCTTGTAGCCAAAG 139989 || |||| ||| | ||| || || | || ||| || |||||| |||||||| Sbjct 421483 GGTCACCTTGCCGTTGATGCGGAGGAGGTAGGAACG--CTCGAGAGTCTTGAAGCCAAAG 421540 Query 139990 TACCTATAGTTGAAATCGAGC 140010 | | |||| ||| ||| || Sbjct 421541 AAGTTGTAGTGGAAGTCGCGC 421561 >seq226 Length=271753 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || ||||| || || || ||||| || || || | Sbjct 170390 ATGCAGATCTTTGTCAAGACCCTTACTGGTAAGACGATCACACTCGAGGTCGAGTCCTCG 170449 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || ||| ||||||||||| || || || || ||||| || || Sbjct 170450 GATACTATTGACAATGTCAAAGCCAAGATCCAAGATAAGGAGGGTATTCCTCCTGACCAG 170509 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| | || || ||||| || || || |||||| | | | |||| || || || Sbjct 170510 CAGCGTCTCATTTTCGCCGGAAAGCAACTCGAGGATGGCCGCACCCTGTCTGACTACAAT 170569 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||||| || || || || | || |||||| ||||||| || Sbjct 170570 ATCCAGAAGGAGTCTACGCTCCATCTCGTTTTGCGACTGCGCGGTGG 170616 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || ||||| || || || || || |||||||| || || | | Sbjct 170618 ATGCAGATCTTTGTCAAGACGCTCACAGGCAAGACAATCACGCTCGAGGTCGAGTCTTCA 170677 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||| || ||||| ||||| || || || || || Sbjct 170678 GACACCATTGACAACGTCAAGGCCAAGATTCAGGACAAGGAAGGTATTCCCCCTGACCAG 170737 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||| | |||||||| || || ||||| |||||| | | | || || |||||| Sbjct 170738 CAACGTCTCATCTTTGCAGGAAAGCAGCTCGAGGATGGCCGCACGCTCTCGGACTATAAC 170797 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||| ||||| || || | ||| | ||| | || | ||||| || Sbjct 170798 ATTCAGAAGGAGTCCACCTTGCACCTTGTGCTTCGCCTCCGCGGTGG 170844 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || ||||| || || || || || |||||||| || || | || Sbjct 170846 ATGCAGATCTTTGTCAAGACGCTCACAGGCAAGACAATCACGCTCGAGGTTGAGTCTTCC 170905 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||| || ||||| || || || ||||| || || Sbjct 170906 GACACGATTGACAATGTCAAGGCCAAGATTCAGGACAAGGAGGGTATTCCTCCTGACCAG 170965 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||| | || || || || || ||||| ||||| | | | || ||||| ||| Sbjct 170966 CAACGTCTCATTTTCGCAGGAAAGCAGCTCGAGGACGGACGGACGCTTTCGGATTACAAC 171025 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||||| || || || || | || |||||| ||||||| || Sbjct 171026 ATCCAGAAGGAGTCTACGCTCCATCTCGTTTTGCGACTGCGCGGTGG 171072 Score = 100 bits (110), Expect = 3e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || |||||||| || || || ||||| || || | || Sbjct 169934 ATGCAGATCTTTGTCAAGACTCTGACCGGTAAGACCATCACCCTCGAGGTGGAGTCTTCC 169993 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || || || || || || || Sbjct 169994 GACACCATTGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGTATTCCCCCTGACCAG 170053 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || | |||||||| || || ||| |||| ||| ||| | | || ||||| ||| Sbjct 170054 CAGCGCCTTATCTTTGCTGGTAAGCAGTTGGAAGATGGCCGAACCCTCTCGGATTACAAC 170113 Query 24884 ATTCAAAAGGAATCGACACTACA 24906 || || ||||| || || || || Sbjct 170114 ATCCAGAAGGAGTCCACCCTCCA 170136 >seq1 Length=1882320 Score = 98.7 bits (108), Expect = 9e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| | || || | || ||||| || ||||| |||||||| || | | Sbjct 161497 ATGCAAATCTTTGTCAAGACCTTGACAGGTAAGACCATTACCCTCGAAGTCGAGTCTTCG 161438 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||| || ||||| || ||||| || || || || Sbjct 161437 GACACCATTGACAACGTCAAGGCCAAGATTCAGGACAAGGAGGGAATCCCCCCTGACCAG 161378 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || | ||||||||||| || |||||||| || | | | | || || || ||| Sbjct 161377 CAGCGACTCATCTTTGCCGGCAAGCAGCTGGAAGACGGCCGCACCCTTTCCGACTACAAC 161318 Query 24884 ATTCAAAAGGAATCGACACTACAC 24907 ||||| |||||||| || || ||| Sbjct 161317 ATTCAGAAGGAATCCACTCTCCAC 161294 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || ||||| || || || || || || || | | Sbjct 79213 ATGCAGATCTTTGTGAAGACCCTTACGGGTAAGACCATCACCCTTGAGGTGGAGTCTTCG 79272 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || ||||| || || || || Sbjct 79273 GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCTGACCAG 79332 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || | ||||| ||||| || ||||| ||||| | | | | || || || ||| Sbjct 79333 CAGCGACTTATCTTCGCCGGTAAGCAGCTCGAGGACGGTCGCACCCTTTCGGACTACAAC 79392 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||||| || || || ||| | ||| | || |||| || || Sbjct 79393 ATCCAGAAGGAGTCCACCCTCCACCTTGTGCTCCGTCTGCGTGGTGG 79439 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449895924131440