Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20esculenta_20[genbank_20GCA_5F000819925.1_202015-01-16] 298 sequences; 20,196,985 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq13 129 5e-25 >seq13 Length=403507 Score = 129 bits (142), Expect = 5e-25 Identities = 218/313 (70%), Gaps = 6/313 (2%) Strand=Plus/Plus Query 34313 TGAGCTCAGTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCAT 34372 |||| || ||||| ||||| | || || || | ||||||||| |||||| || | Sbjct 178313 TGAGATCGGTCTCGGGGTTCTTGCAGTCGCCGCAGAGGACAAACTTGTCGATGAAGCCGT 178372 Query 34373 CAAGCAGGTCCTGTA-AC--TTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGT 34429 | ||||| || | | || || || |||||| | ||||||||||||| | || |||| Sbjct 178373 CGAGCAGCTCTCGGAGACGGTT---GGCGTCGTGAGCGCCGTTGACGATGTAGCGGTCGT 178429 Query 34430 TTTTGTAATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAA 34489 | || | |||| | || || || || |||||||| || ||| | || || ||||| Sbjct 178430 TCTTTTCGTCGAACGAGGTCTGGGCACCAAGCTCGCAGCCAAAGAATTTGGTGGGGTAGG 178489 Query 34490 TGGCCGGACGTCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGC 34549 | | || || | |||| || || |||| ||| ||| |||||| |||||||| | Sbjct 178490 TAGGAGGGCGGCTGAGCGAGCGAGCAATGTCGGACATATTGGGGATGACGGTCTTGATAC 178549 Query 34550 CGTTGCCCTTTCCTTCGACCTTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGT 34609 |||||||||| || |||| ||||| || | | ||||| ||| ||||||||| || Sbjct 178550 CGTTGCCCTTACCCTCGATCTTGGTCTGGAGGAGAGGCATGCGGTATCGGTAGAACTTGT 178609 Query 34610 CCGCCACATTGCG 34622 | | |||| ||| Sbjct 178610 CGTCGACATCGCG 178622 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412840100610914