Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20esculenta_20[genbank_20GCA_5F000819925.1_202015-01-16] 298 sequences; 20,196,985 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq236 176 7e-38 seq79 176 7e-38 seq46 120 5e-21 seq277 107 3e-17 seq237 100 5e-15 seq57 93.3 7e-13 >seq236 Length=132806 Score = 176 bits (194), Expect = 7e-38 Identities = 238/330 (72%), Gaps = 9/330 (3%) Strand=Plus/Plus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399 ||| ||||| || ||| | ||||||| ||| ||| |||||||| || || ||||| Sbjct 3644 ACCCTCGTCACGCGAGATGAGTTCGTTGGAGAAGGTGAGACCGGGCATAAGACCACGCTT 3703 Query 794400 CTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 794459 ||||||||| ||||||| ||| ||| ||||| ||||||||||| ||||||||||| Sbjct 3704 CTTGAGCCAGAAGATGGAGGCGAAGGAGCCAGAGAAGAAGATGCCCTCAACGGCGGCAAA 3763 Query 794460 GCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCA 794519 | | ||||| |||||||| || || | | | || | ||||||| | ||||| Sbjct 3764 GGCAACGAGACGCTCGGCGAAGGTAGCGCGTCGGTC---GCTGATCCAGCGAAGAGCCCA 3820 Query 794520 CTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGG---TGGTCCTT 794576 || ||||| | | | || ||| | || |||| ||| ||||||| | | || Sbjct 3821 GTCGGCCTTCTCCTTGACGACGGGGATTGTCTCGACAGCGTCAAAGAGGAACTCGCGCTG 3880 Query 794577 CTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTT 794636 |||| || || || ||||||||||||||| |||||||||||||| ||||||||| Sbjct 3881 CTCG---GGCTCGCGGATGTAGGTGTCGATGAGCAGCGAGTAGGTCTCGCTGTGGATGTT 3937 Query 794637 TTCGATGGCGATCTGGAAGCCATAAAAGCA 794666 || || ||||||||| ||||| ||||| Sbjct 3938 CTCCATCATGATCTGGAAACCATAGAAGCA 3967 >seq79 Length=472637 Score = 176 bits (194), Expect = 7e-38 Identities = 342/505 (68%), Gaps = 15/505 (3%) Strand=Plus/Plus Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599 ||||||||| ||||| ||||||| ||| |||||||| ||||||||||| | |||||| Sbjct 421111 CTGGTCGACGTAGCGAGCCGTGTTGTTGAAGACGCGAAGCATGGGCACGATACCGTTGCT 421170 Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659 | ||||||||||| || | ||| | ||| | | || | ||| | | || Sbjct 421171 GACACCGTTGGTGCCGGCAATGTACGAGCCAGTACCTCGGATGCAGTGGATGTTGAGACC 421230 Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719 ||| || ||||| | ||||||||| | || || | || || || ||||||||||| || Sbjct 421231 GATACCACCGGCAGTCTTGGAGATCATGGCACAGGTCTTGAGGGTGTCGTAGATGCCATC 421290 Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCC 2073779 |||||||||| |||||||| | || || ||||||||| || ||| | | || || Sbjct 421291 GATCGAGTCGTCCTTCATGGTGACGAGGAAACACGACGAGAGCTGGGGGTGTGGTGTCCC 421350 Query 2073780 GGCATTGAAGAGCGTGGGCGTCGCCGCCGTGTACGACTGTTGGGACATGGCCTCGTAGGT 2073839 ||| |||||||| ||||||| || || | ||| || |||||| | |||||| Sbjct 421351 GGCGTTGAAGAGAGTGGGCGAAGCGTGGGTAAAGCACTTCTGCGACATGAGGTTGTAGGT 421410 Query 2073840 GGCGAGCACGCGCGCCAGCGCGTCTTGGACGTCGGCAAACCCATAGTGGCCGATGGCGAC 2073899 ||| ||| | | | ||| ||| ||| | ||| |||| |||||| Sbjct 421411 TTCGATGGCGCTCTCGA---TGTCCTGGCCGTGG--------ATA----CCGACGGCGAC 421455 Query 2073900 GCGCATGATCATGTACTGGGGTCGCTCGACGACGGCGTCGCGCACCTTGGTCAGGTAGGA 2073959 ||||||| ||||| ||||||||||||| || | || | | |||||||| Sbjct 421456 ACGCATGAGCATGTGCTGGGGTCGCTCGGTCACCTTGCCGTTGATGCGGAGGAGGTAGGA 421515 Query 2073960 CCGACGCAGGGTCGCCAGGCCAAAGTACGAGTAGGCCAGGTCGCGCTCGTGGCGGATGGC 2074019 || || ||| | ||||||| | |||| | ||||||||||| | |||||| Sbjct 421516 ACGCTCGAGAGTCTTGAAGCCAAAGAAGTTGTAGTGGAAGTCGCGCTCGTAGATGATGGC 421575 Query 2074020 GGCGTCGAGGGCCTCCTTGTGCGCC 2074044 | |||||| ||||||||| || Sbjct 421576 CGAGTCGAGCTGGTCCTTGTGCTCC 421600 Score = 118 bits (130), Expect = 2e-20 Identities = 286/439 (65%), Gaps = 0/439 (0%) Strand=Plus/Plus Query 2071574 ACTGGACGACCTCGGTGCACAGGTTGGCCGACATCGTGGTGCCCAGGTTCTGCTGGTTGC 2071633 ||| || || |||||| |||||||||| || | ||||||| ||||||| |||||||| Sbjct 420672 ACTCGATGATCTCGGTACACAGGTTGGAGCACTTGATGGTGCCGAGGTTCTTCTGGTTGC 420731 Query 2071634 TGGTCAGGTTGACGGCGTCCTTGTGCAGCATGTAGGGCGCACCCGTCTCGATCTGCGCCG 2071693 | | ||||| | || ||||||| || ||| | || ||| |||||| |||||| | Sbjct 420732 TCTTGCGGTTGGCAGCATCCTTGTAGAGGATGAACGGGTTACCAGTCTCGGTCTGCGACT 420791 Query 2071694 TGACGATGGCCGACCAAATTTGGCGCGCGGGCACCGAGGTCCTCGCGCGGCCCTNNNNNN 2071753 || |||||| |||| | | | || || | | | | | || |||| Sbjct 420792 CGAGGATGGCGTACCAGAGCTTCTGAGCCTTGACGGTGCGCTTGGAACGACCCTCGGCCT 420851 Query 2071754 NNNNNNNNNNNNAGAGGGCGTCAAAGGCGGCGCCGTGGCACTCGTGCAGGCCGGGCGCCT 2071813 ||||| ||||| || | || | ||| ||| || ||||| || Sbjct 420852 CGTAGCGCTCGTAGAGGCGCTCAAACTCGTCACCATAGCAGTCGGCAAGACCGGGGCACT 420911 Query 2071814 CGGACGGGCAAAAGAGCGACCAGTCGCCGCCAGTCACCACGCGGCGCATAAACAGGTCGC 2071873 || ||||| | |||||||||||| ||| | | || | ||| || |||||| Sbjct 420912 CGTTGGGGCACATGAGCGACCAGTCTCCGTTCTGCTCGACCCTCTTCATGAAGAGGTCGG 420971 Query 2071874 ACGTCCACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTT 2071933 ||| || |||| ||||| || || || || ||||||||| ||||||||||| Sbjct 420972 GAACCCAGAGTGCGTAGAAGAGCTCTCGGGCACGCACCTCCTCCTTACCGTGGTTCTTGC 421031 Query 2071934 TCAGGTCGAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGC 2071993 |||||||| | |||| | || | |||||| ||||| | |||| ||||||||| | Sbjct 421032 GGAGGTCGAGGAACTCGAACACATCCGAGTGCCAAGGCTCAATGTAGATGGCAAAGGCAC 421091 Query 2071994 CCTTGCGCTTGCCGCCGCC 2072012 | |||||| ||| || Sbjct 421092 CGGGACGCTTGTTGCCACC 421110 >seq46 Length=360405 Score = 120 bits (132), Expect = 5e-21 Identities = 286/425 (67%), Gaps = 12/425 (3%) Strand=Plus/Minus Query 2019003 GACGGCAACATGCCCAACCTCTTGCTGGCGGGCCCGCCCGGCACGGGCAAGACCACGAGC 2019062 ||||||||| || | ||| | | |||| | ||| |||| || ||||| || | Sbjct 300156 GACGGCAACTGTCCGCATCTCCTCATTTCGGGTCTGCCAGGCATCGGTAAGACTACTTCC 300097 Query 2019063 ATCGCGTGCCTGGCGCGCGTGCTCTTGGGCGCGGCCGCCGACGAGGCCGTGCTCGAACTC 2019122 || || || ||||| | |||| | |||| || | | || | ||||| |||||| Sbjct 300096 GTCCTTTGTCTCGCGCGTGCGCTCCTCGGCGATGCTTACAAGGAAGGTGTGCTGGAACTC 300037 Query 2019123 AATGCGTCAGACGAGCGCGGCGTGGACGTCGTGCGTAGAATCATCAAGCATCACGCTT-- 2019180 ||||| || |||||||| || |||||||| ||||| | | |||||| ||| || Sbjct 300036 AATGCTTCCGACGAGCGAGGTGTGGACGTGGTGCGAAACAAGATCAAG----ACGTTTGC 299981 Query 2019181 CGAAAAGAA--TCGACCTGCCGCCCGGCCGCCACAAGGTGATCATCCTCGATGAGGCCGA 2019238 ||||||| || || || || ||| | |||||| | |||| ||||| || ||||| Sbjct 299980 ACAAAAGAAGGTCTCGCTTCCTCCAGGCAGACACAAGATTGTCATTCTCGACGAAGCCGA 299921 Query 2019239 CTGCCTTACGTCGGCGGCCCAGCAGGCCCTCCGATCG-ACCATGGAAAAGTACACCAACA 2019297 | | | ||| | || || || || ||| | || ||| |||||||| | ||| | |||| Sbjct 299920 CAGTATGACGCCTGCAGCACAACAAGCCTTGCG-TCGAACCATGGAGATCTACTCGAACA 299862 Query 2019298 CGACGCGGTT-TGCGCTGGCCTGCAACACGTCGTCGATGGTCATCGAAGCCCTCCAGAGC 2019356 |||| || || ||| | || |||||| | | | |||||||| | ||||| | Sbjct 299861 CGACACGTTTCTGC-TTTGCGTGCAACCAGAGCAACAAGATCATCGAACCTATCCAGTCC 299803 Query 2019357 CGTTGCGCCATCTTGCGCTTTGCGCGCCTCACCGACGCCCAGATCGCCGCGCGTCTGCGC 2019416 | ||||||||| |||| | || ||| || | |||||| | |||||||| | Sbjct 299802 AGATGCGCCATCCTGCGATATGGAAAAGTCAAGGATGAGCAGATCCTCAAGCGTCTGCTC 299743 Query 2019417 GAGAT 2019421 ||||| Sbjct 299742 GAGAT 299738 >seq277 Length=433459 Score = 107 bits (118), Expect = 3e-17 Identities = 163/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 1485473 ACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGA 1485532 |||||||||| | |||||| || || |||| |||||| ||| || || ||| | | || Sbjct 196700 ACTTGGTGACCGACTTGGTTCCTTCAGAGATAGCGTGCTTGGATAGCTCACCGGGTAGGA 196641 Query 1485533 TCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGCG 1485592 | ||||| || |||||||||||||| || | ||| ||| |||||| | | Sbjct 196640 TGAGGCGGACAGCGGTCTGGATCTCTCGCGACGAGATGGTGGACTTCTTGTTGTAGGAAG 196581 Query 1485593 CCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGA 1485652 | || |||||| ||| ||||||| |||| ||||| | ||| |||||||| | | Sbjct 196580 CGAGCTTCGAGGCCTCAGTGGCGATGCGCTCGAAGATGTCCTGGACGAACGAGTTGAGAA 196521 Query 1485653 TCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704 | | ||| | ||||| || || || ||| ||||| |||||||| || || Sbjct 196520 TGGCCATGGCCTTGTTCGAAATACCAGTGTCTGGGTGAACCTGCTTAAGAAC 196469 >seq237 Length=123716 Score = 100 bits (110), Expect = 5e-15 Identities = 204/296 (69%), Gaps = 8/296 (3%) Strand=Plus/Minus Query 429508 CGCTCCAGATCGGGTGGACCGTCGAGCGCCACCTGCGCACCGGCGACCCCGTGGTCATGA 429567 |||| ||| ||| |||| ||||||||| ||||| ||||||| ||| || | | Sbjct 22030 CGCTGCAGCCCGGTTGGATCGTCGAGCGTCACCTCAAGGACGGCGACTACGTTCTCTTCA 21971 Query 429568 ACCGGCAGCCGTCGCTCCACATGGGGTCGATGCTCAACCACAAGGTGGTGCCCATGCCCG 429627 | || ||||| ||| | |||| | ||| ||| | |||| | | || |||| | Sbjct 21970 ATCGTCAGCCTTCGTTGCACAAGATGTCAATGATGTCTCACAGGATCAAGCTCATGGACT 21911 Query 429628 G-TCGCACCTTCCGGCTCAACCTGGCCGTGACGGGCACCTACAACGCCGACTTTGACGGC 429686 ||| |||||||| |||||||| || ||| | |||||||| || || ||||| Sbjct 21910 ACTCG-ACCTTCCGTCTCAACCTTAGTGTAACGCCTCCGTACAACGCTGATTTCGACGGT 21852 Query 429687 GACGAGATGAACCTGCACGTGCCCCAG-TCGGAGATGGCACGCGCCGAAGTCGCCCACA- 429744 ||||||||||| ||||||| || ||| || ||| | | || ||||| || | || | Sbjct 21851 GACGAGATGAATTTGCACGTTCCACAGAGCGAAGA-GACCCGAGCCGAGCTCTCGCAGAT 21793 Query 429745 -CCATGGGCGTGGCCCTCAAGGCCGTGTCGCCGCAGGCCAACAAGCCCATCATCGG 429799 ||||| ||| | | || ||| ||||| ||||| ||||||||| |||| || Sbjct 21792 CGCATGG--GTGCCTCGTCAGATCGTATCGCCTCAGGCTAACAAGCCCGTCATGGG 21739 >seq57 Length=374387 Score = 93.3 bits (102), Expect = 7e-13 Identities = 318/491 (65%), Gaps = 29/491 (6%) Strand=Plus/Minus Query 653656 GGGCGACAAACTGTCGTCGCGCCACGGGCAAAAGGGCACCGTGGGCAGCGTGCGCTCGAC 653715 ||||||||| | ||||||||||||| || |||||||| | |||| | | ||| | Sbjct 304178 GGGCGACAAGTTTGCGTCGCGCCACGGCCAGAAGGGCACGATCGGCATCACGTA-TCGGC 304120 Query 653716 CG-AGGAAATGCCGTGGTCGCCGCGCGGGGGCGCCACGCCCGACATCGTCATCAACCCGC 653774 | |||| ||||||| ||| | || || | || || ||||| |||||||||||| Sbjct 304119 AGGAGGACATGCCGTTCTCGGC---CGAAGGTGTGACACCGGACATTATCATCAACCCGC 304063 Query 653775 ACGCCATCCCGTCGCGCATGACCATGGGCAAGATGATGGAGGCCCTCCTGGGCAAGGTGG 653834 |||| ||||||||||||||||| || || | || | ||| || || |||||||| Sbjct 304062 ACGCGATCCCGTCGCGCATGACGATCGGACACTTGGTCGAGTGTCTGTTGTCCAAGGTGG 304003 Query 653835 C----CTGCCGCGAGGGCTACGTGGGCGACGGCACCCCGTTTGGCGGCGTCACCGT---- 653886 | ||| | |||| | | |||||| | || ||||| || |||| || Sbjct 304002 CAGCGCTGTC----GGGCCAGGAGGGCGATGCGACGCCGTTCACCGAGCTCACGGTGGAG 303947 Query 653887 NNNNNNNNNNNNNNNNNAGTTGGCCCGCCACGGGTGCGAG-CGCTACGGCAAGGAGGTGC 653945 | ||||| | || | | || ||| ||| ||||||| Sbjct 303946 GCGGTGTCGTCGATCCTACGTGGCCTG----GGCTACCAGTCGCGTGGGC-TGGAGGTGA 303892 Query 653946 TCTACCAC--CCGCACACG-GGCGAGCCCATGGAGGCGTTGATCTTTTCGGCGCCGGTCT 654002 | |||||| || |||| | || || ||| ||||| | | | | || ||| | Sbjct 303891 TGTACCACGGCCACACAGGTCGCAAG---ATGCAGGCGCAGGTGTACTTGGGACCGACGT 303835 Query 654003 ACTACCAGGCCCTGCGCCACGTGGCCATCGACAAGATCCACGCCCGGCCGCGCGGCCCCG 654062 |||||||| || ||| ||| ||| ||||||||| | || |||| || || | Sbjct 303834 ACTACCAGCGTCTCAAGCACATGGTGGACGATAAGATCCACTCTCGAGCGCGAGGACCGG 303775 Query 654063 TGCAGATGCTCACCAAGCAGCCGGTCGAGGGCCGGTCGCGCTCGGGCGGCTTTCGCCTCG 654122 ||||||| || || ||||||||| || ||||| || || ||||| | || ||| Sbjct 303774 TGCAGATCCTGACGCGGCAGCCGGTGGAAGGCCGATCACGTGGAGGCGGTCTGCGTTTCG 303715 Query 654123 GAGAGATGGAG 654133 ||||||||||| Sbjct 303714 GAGAGATGGAG 303704 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916214700380822