Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20esculenta_20[genbank_20GCA_5F000819925.1_202015-01-16] 298 sequences; 20,196,985 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq226 104 2e-17 >seq226 Length=271753 Score = 104 bits (114), Expect = 2e-17 Identities = 154/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || ||||| | || | ||||| || || ||||||||||| |||| | ||||| | Sbjct 170376 CGAAGCACAAGGTGCAAGGTGGACTCCTTCTGAATGTTATAGTCCGAGAGCGTGCGGCCA 170317 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || ||||| || || || ||| | || | | |||||| || || |||||||| || ||| Sbjct 170316 TCCTCGAGCTGCTTTCCTGCAAAGATGAGACGTTGCTGGTCAGGGGGAATACCTTCCTTG 170257 Query 29692 TCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 || || ||| || | ||||| | || | ||||| ||| || || || | ||| || Sbjct 170256 TCCTG-AATCTTGGCCTTGACGTTGTCAATGGTGTCTGAAGACTCGACCTCCAAAGTGAT 170198 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || |||||||| ||||| || ||||| || ||||| Sbjct 170197 GGTCTTGCCAGTCAAGGTCTTGACAAAGATTTGCAT 170162 Score = 95.1 bits (104), Expect = 9e-15 Identities = 152/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || ||||| | || | ||||| || || ||||||||||| |||| | ||||| | Sbjct 170832 CGAAGCACAAGGTGCAAGGTGGACTCCTTCTGAATGTTATAGTCCGAGAGCGTGCGGCCA 170773 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || ||||| || || || ||| | || | | |||||| || || |||||||| || ||| Sbjct 170772 TCCTCGAGCTGCTTTCCTGCAAAGATGAGACGTTGCTGGTCAGGGGGAATACCTTCCTTG 170713 Query 29692 TCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 || || ||| || | ||||| | || | ||||| ||| || || || || || || Sbjct 170712 TCCTG-AATCTTGGCCTTGACGTTGTCAATGGTGTCTGAAGACTCGACCTCGAGCGTGAT 170654 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| || | || || ||||| |||||||| Sbjct 170653 TGTCTTGCCTGTGAGCGTCTTGACAAAGATCTGCAT 170618 Score = 95.1 bits (104), Expect = 9e-15 Identities = 152/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 |||| || | ||| ||||| || || || || ||||| ||||||| || || || Sbjct 171060 CGCAAAACGAGATGGAGCGTAGACTCCTTCTGGATGTTGTAATCCGAAAGCGTCCGTCCG 171001 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || ||||| || || || || | || | | |||||| || || ||||||||||| ||| Sbjct 171000 TCCTCGAGCTGCTTTCCTGCGAAAATGAGACGTTGCTGGTCAGGAGGAATACCCTCCTTG 170941 Query 29692 TCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 || || ||| || | |||||| | || | ||||| ||| || || || || || || Sbjct 170940 TCCTG-AATCTTGGCCTTGACATTGTCAATCGTGTCGGAAGACTCAACCTCGAGCGTGAT 170882 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| || | || || ||||| |||||||| Sbjct 170881 TGTCTTGCCTGTGAGCGTCTTGACAAAGATCTGCAT 170846 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 |||| || | ||| ||||| || || || || || || || || | | |||||| | Sbjct 170604 CGCAAAACGAGATGGAGCGTAGACTCCTTCTGGATATTGTAGTCAGACAGGGTGCGGCCA 170545 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || |||||||| || || || | || | | ||||| || || ||||||||||| || Sbjct 170544 TCCTCGAGTTGCTTTCCGGCGAAAATGAGACGCTGCTGGTCAGGAGGAATACCCTCCTTA 170485 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 ||||| | || ||||||| | || | ||| || || || || || || || || Sbjct 170484 TCTTGGATCTTGGCTTTGACATTGTCAATAGTATCCGAGGACTCGACCTCGAGTGTGATC 170425 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || ||||| | ||| || ||||| |||||||| Sbjct 170424 GTCTTACCAGTAAGGGTCTTGACAAAGATCTGCAT 170390 Score = 82.4 bits (90), Expect = 6e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || || || | ||| || ||||| || || || ||||| ||||||| | ||| || | Sbjct 170148 CGAAGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAATCCGAGAGGGTTCGGCCA 170089 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || | || || |||||| | || | | ||||| || || ||||||||||| ||| Sbjct 170088 TCTTCCAACTGCTTACCAGCAAAGATAAGGCGCTGCTGGTCAGGGGGAATACCCTCCTTG 170029 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 || || | || ||||| | || | ||||| ||| || || || || || || Sbjct 170028 TCCTGGATCTTGGCCTTGACGTTGTCAATGGTGTCGGAAGACTCCACCTCGAGGGTGATG 169969 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || | || || ||||| |||||||| Sbjct 169968 GTCTTACCGGTCAGAGTCTTGACAAAGATCTGCAT 169934 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385217800932018