Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20esculenta_20[genbank_20GCA_5F000819925.1_202015-01-16] 298 sequences; 20,196,985 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq226 102 5e-17 seq1 84.2 1e-11 >seq226 Length=271753 Score = 102 bits (112), Expect = 5e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | || || || || | ||| || || ||| || || ||||||||||| || Sbjct 171073 ACCACCGCGCAGTCGCAAAACGAGATGGAGCGTAGACTCCTTCTGGATGTTGTAATCCGA 171014 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || ||| |||| || | || ||||| || ||||| | ||| ||||| || | || Sbjct 171013 AAGCGTCCGTCCGTCCTCGAGCTGCTTTCCTGCGAAAATGAGACGTTGCTGGTCAGGAGG 170954 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||| || ||||| ||| || | | |||| ||| | |||||| || || | Sbjct 170953 AATACCCTCCTTGTCCTGAATCTT-GGCCTTGACATTGTCAATCGTGTCGGAAGACTCAA 170895 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | |||||| || || ||||| | ||| || ||||||||||||||| Sbjct 170894 CCTCGAGCGTGATTGTCTTGCCTGTGAGCGTCTTGACAAAGATCTGCATA 170845 Score = 95.1 bits (104), Expect = 8e-15 Identities = 142/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 33553 GTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCG 33612 |||||||| || || |||||||| || ||||| ||||| | || || | || ||||| Sbjct 171270 GTGCTCTCCTTCTGAATGTTGTAGTCCGAGAGCGTGCGGCCATCCTCGAGCTGCTTTCCT 171211 Query 33613 GCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTC 33672 ||||| || | ||| ||||| || | || | |||||| ||||| ||| || || Sbjct 171210 GCAAAGATGAGACGTTGCTGGTCAGGGGGAATACCTTCCTTGTCCTGAATCTTGGCCTTG 171151 Query 33673 AACATAGTCAC-GGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGT 33731 | ||| |||| |||||| || || || || | ||||| || || || || || || Sbjct 171150 A-CATTGTCAATGGTGTCTGAAGACTCGACCTCCAAAGTGATGGTCTTGCCAGTCAAGGT 171092 Query 33732 TTTTACAAAGATCTGCATA 33750 || ||||||||||||||| Sbjct 171091 CTTGACAAAGATCTGCATA 171073 Score = 87.8 bits (96), Expect = 1e-12 Identities = 144/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 33546 ATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTG 33605 ||| || ||| ||| || || ||||||||||| ||||| || || | || ||||| || Sbjct 170137 ATGGAGGGTGGACTCCTTCTGGATGTTGTAATCCGAGAGGGTTCGGCCATCTTCCAACTG 170078 Query 33606 TTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTT 33665 || || ||||| || | |||||||| || | || | ||| || ||||| || || Sbjct 170077 CTTACCAGCAAAGATAAGGCGCTGCTGGTCAGGGGGAATACCCTCCTTGTCCTGGATCTT 170018 Query 33666 CTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTG 33724 | | || | ||| | ||||||| || ||||| || | ||||| || ||||| | Sbjct 170017 -GGCCTTGACGTTGTCAATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTACCGG 169959 Query 33725 TTAACGTTTTTACAAAGATCTGCAT 33749 | | || || |||||||||||||| Sbjct 169958 TCAGAGTCTTGACAAAGATCTGCAT 169934 Score = 86.0 bits (94), Expect = 4e-12 Identities = 137/194 (71%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617 ||| || || ||||| || || ||||| ||||| | || || | || ||||| ||||| Sbjct 170809 CTCCTTCTGAATGTTATAGTCCGAGAGCGTGCGGCCATCCTCGAGCTGCTTTCCTGCAAA 170750 Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677 || | ||| ||||| || | || | |||||| ||||| ||| || || | | | Sbjct 170749 GATGAGACGTTGCTGGTCAGGGGGAATACCTTCCTTGTCCTGAATCTTGGCCTTGA-CGT 170691 Query 33678 AGTCAC-GGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTA 33736 |||| |||||| || || || || | |||||| || || ||||| | ||| || | Sbjct 170690 TGTCAATGGTGTCTGAAGACTCGACCTCGAGCGTGATTGTCTTGCCTGTGAGCGTCTTGA 170631 Query 33737 CAAAGATCTGCATA 33750 |||||||||||||| Sbjct 170630 CAAAGATCTGCATA 170617 Score = 84.2 bits (92), Expect = 1e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | || || || || | ||| || || ||| || || || ||||| || || Sbjct 170617 ACCACCGCGCAGTCGCAAAACGAGATGGAGCGTAGACTCCTTCTGGATATTGTAGTCAGA 170558 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || ||||| | || || | ||| |||||||| ||||| | ||||||||| || | || Sbjct 170557 CAGGGTGCGGCCATCCTCGAGTTGCTTTCCGGCGAAAATGAGACGCTGCTGGTCAGGAGG 170498 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACG-GTGTCGCTTGATTCCA 33700 | ||| || || || || || ||| | ||| |||| || || || || | Sbjct 170497 AATACCCTCCTTATCTTGGATCTTGGCTTTGA-CATTGTCAATAGTATCCGAGGACTCGA 170439 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | |||||||| ||||| || | || || ||||||||||||||| Sbjct 170438 CCTCGAGTGTGATCGTCTTACCAGTAAGGGTCTTGACAAAGATCTGCATA 170389 >seq1 Length=1882320 Score = 84.2 bits (92), Expect = 1e-11 Identities = 162/235 (69%), Gaps = 3/235 (1%) Strand=Plus/Minus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 ||||||| | || ||| | ||| | || || ||| ||| || || |||||||| || | Sbjct 79441 CACCACCACGCAGACGGAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCG 79382 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 | || ||||| |||| || | || || ||||| || || | |||||||| || | | Sbjct 79381 AAAGGGTGCGACCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCAGGGG 79322 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699 | | || || ||||| || || || | | | ||| | |||||| || ||| Sbjct 79321 GGATTCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGTTGTCGATGGTGTCCGAAGACTCC 79263 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGTTG 33754 || |||| ||||| || ||||| || | || || |||||||||||||| |||| Sbjct 79262 ACCTCAAGGGTGATGGTCTTACCCGTAAGGGTCTTCACAAAGATCTGCAT-GTTG 79209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328702806188160