Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20esculenta_20[genbank_20GCA_5F000819925.1_202015-01-16] 298 sequences; 20,196,985 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq79 132 5e-26 >seq79 Length=472637 Score = 132 bits (146), Expect = 5e-26 Identities = 981/1543 (64%), Gaps = 51/1543 (3%) Strand=Plus/Plus Query 146893 TTGACCACTTGAAACTCGCCCGCCAGCACACGTCT-GAGATACACATTGCTAGTGAAAGG 146951 || ||||| || ||||| || || |||||||| | ||| || | ||| ||| | || Sbjct 420059 TTAACCACCTGGAACTCTCCGGCGAGCACACGGCGCGAG-TAGATGTTGGATGTGTACGG 420117 Query 146952 CTCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCAC 147011 |||||| |||| || ||| | || || ||| | |||||||||||| || | Sbjct 420118 CTCAAAGCACTCGTTGAAGCCGAGAATCTGACTCGTCGAGGCGGTAGGCATGGGGGCGAG 420177 Query 147012 CAACAATGAATTTCGCAGACCGTACGCACGG--ATGTTGTCCTTCAAAGTTTGCCAGTCC 147069 | ||| || || |||||||||| || || || ||| |||| | ||||||| Sbjct 420178 GAGCAAGGAGTTGCGCAGACCGT--GCTTGGCAATCTTGGCCTTGAGCTCAGCCCAGTCC 420235 Query 147070 CACATCGACGAGGGCGTCACGTTCCACATGTCGTACTGGAGCACTCCTCGACTGGCGGGA 147129 |||| ||| || || || ||||||||| ||||| ||| | || | || || Sbjct 420236 CACAGGTCCGATGGGGTGACACCCCACATGTCATACTGCAGCTCACCCTGCGAAGCAGGC 420295 Query 147130 CTGCCAGCGAACGTAGTGTAGCTTCCGTCGCGCT-GCGCCAATTCACAGCTTGCCTCGAG 147188 ||| ||| |||| ||| | |||| || || | |||| || || | |||||| Sbjct 420296 GAGCCGGCGTACGTCTCGTACGTGCCGT-GCTCTTGAGCCAGCTCGCACGATCGCTCGAG 420354 Query 147189 CGCTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAGGACGGTCGCTTCTTCGCTCTC 147248 ||| | | ||| || || || ||| || ||| || | || || ||| Sbjct 420355 CGCAGCGTGGTAAATAGTCTCAAAGATCTGCACGTTAAGTCGGCGAGCCTCGGGCGACTC 420414 Query 147249 GTAAGGCATA-CGCAGAAGCACAAAGGCATCGGCCAAACCCTGGATACCGACGCCGATAG 147307 | || || || | || | || ||||| || || | |||||| | ||||| ||||| | Sbjct 420415 G-AACGCGTAGCCCATGATCATGAAGGCGTCAGCAAGACCCTGAACACCGATACCGATGG 420473 Query 147308 GTCGATGCTTTTCGTTG---CTGCG--CTTCGCGCTCGCTATGGGATAGTGGTTGCGATC 147362 |||| || |||| ||||| |||| |||| | ||| |||| |||| || Sbjct 420474 GTCGGTGGCGCATGTTGGATCTGCGAGCTTC---CTCG--ACGGGGTAGTAGTTGATGTC 420528 Query 147363 AATAATCTTGTTGAGGTTAC-GCACTACAACTTTAGTTATTGTTTTGAGTTTCTCGAAAT 147421 || |||||||||||||| ||| | | || | | | | ||| || || | Sbjct 420529 GATGATCTTGTTGAGGTTCTTGCAG-ATGGCCTTGGCAACCTTGTGGAGACGCTTAAAGT 420587 Query 147422 CATAAGTCCCG-TCTTCGACACG-TACGCATTGGTTCACGGCGATAGACGCCAGATTGCA 147479 | || ||| | | || || || | | || || || || || || || ||||| Sbjct 420588 CGTACGTCTTGGTGACCGGGTCGATAAACGTGGG--CAGCGCAATCGAGGCAAGGTTGCA 420645 Query 147480 GACGGCCGTCTCTTC-GGCGTCGCTGTACTGCACGATTTCGGCGCACAGGTTGCTGCATT 147538 || || ||| || |||| | ||||||| | ||| |||| ||||||||| ||| | Sbjct 420646 CACAGCGACCTCGTCTGGCG-CACTGTACTCGATGATCTCGGTACACAGGTTGGAGCACT 420704 Query 147539 TTATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGT 147598 | ||| || | || | ||| ||||| || || ||| || || ||| |||| ||| Sbjct 420705 TGATGGTGCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCAGCATCCTTGTAGAGGATGA 420764 Query 147599 ACGGTCCGCCGGTCTCGACTTGCGTTTCAACGATAAACCTATGC-AGGTCCTGCGCTCGC 147657 |||| || |||||| |||| || | ||| | || || | ||| || Sbjct 420765 ACGGGTTACCAGTCTCGGTCTGCGACTCGAGGATGG-CGTACCAGAGCTTCTGAGCCTTG 420823 Query 147658 ACCCGCTGCCGATAG--CGGCCCTCGTTTTCGTACCGCTCGTACAACCGCTCAAACTCGT 147715 || | ||| | | || |||||| ||||| |||||||| | ||||||||||||| Sbjct 420824 AC--GGTGCGCTTGGAACGACCCTCGGCCTCGTAGCGCTCGTAGAGGCGCTCAAACTCGT 420881 Query 147716 CGCCGTAGCAATCGGCAAGGCCGGGACACTGATGCGGACACATCAGCGACCACATGTCGT 147775 | || ||||| |||||||| ||||| |||| | || ||||| |||||||| ||| Sbjct 420882 CACCATAGCAGTCGGCAAGACCGGGGCACTCGTTGGGGCACATGAGCGACCAGTCTCCGT 420941 Query 147776 CCGCGTTAACGCGTCGCATAAACAGATCCGGCACCCACAGCGCGTACATAAGATCGCGCG 147835 | | || | ||| || || || || ||||| || ||||| | || || || | Sbjct 420942 TCTGCTCGACCCTCTTCATGAAGAGGTCGGGAACCCAGAGTGCGTAGAAGAGCTCTCGGG 421001 Query 147836 CTTTGCAA-TCCTCGGCGCCCATGTTGCGTTTCAAATT--AAGCACGCTATAGATGTCGG 147892 | ||| ||||| || ||| | | | | | | || | | | | || | Sbjct 421002 CAC-GCACCTCCTCCTTACCGTGGTT-CTTGCGGAGGTCGAGGAACTCGA-ACACATCCG 421058 Query 147893 CGTGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACGCTTT---CCGCCCTGGTCGA 147949 |||||| || |||||||||| ||| | ||||| |||||| || |||||||||| Sbjct 421059 AGTGCCAAGGCTCAATGTAGATGGCAAAGGCACCGGGACGCTTGTTGCCACCCTGGTCGA 421118 Query 147950 CATGGCGCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCGCTCGCAGTG-CCG 148008 | | ||| || ||||||| || ||||| | |||||| | | ||| | || | ||| Sbjct 421119 CGTAGCGAGCCGTGTTGTTGAAGACGCGAAGCATGGGCACGATACCGTT-GCTGACACCG 421177 Query 148009 TTGGTGGAATTGATCTTGCTGCCGCGGGCTCGCACTTCGTGCACGTTAACGCCAATGCCG 148068 |||||| || | ||| |||| | ||| | ||| | || || || Sbjct 421178 TTGGTGCCGGCAATGTACGAGCCAGTACCTCGGATGCAGTGGATGTTGAGACCGATACCA 421237 Query 148069 CCGCCGTACTTTGATATGGCAGCGCAATCGCCCA-ATGTCGT-GTAGATGCCGTCGATGC 148126 ||| | ||| || || || ||| | | | | || ||||||||| ||||| Sbjct 421238 CCGGCAGTCTTGGAGAT--CATGGCACAGGTCTTGAGGGTGTCGTAGATGCCATCGATCG 421295 Query 148127 TGTCGTTTTTGACGCCAAGCAAAAAACACGAACACATTTGCGGAATCCGCGTTCCCGCCG 148186 ||||| || | | | | |||||||| | | || || | || || || Sbjct 421296 AGTCGTCCTTCATGGTGACGAGGAAACACGACGAGAGCTGGGGGTGTGGTGTCCCGGCGT 421355 Query 148187 AGAAAAGGGTGGGACTCGCGTGCGTAAACAATTTTTGACTCATCATGCGATACGTCTCAA 148246 ||| || ||||| ||||| ||||| | || || ||| | | || || || | Sbjct 421356 TGAAGAGAGTGGGCGAAGCGTGGGTAAAGCACTTCTGCGACATGAGGTTGTAGGTTTCGA 421415 Query 148247 TAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCGCATGAGCATGTGCTGTG 148306 | ||| |||||||| | |||||| || || | ||||| ||||||||||||||||| | Sbjct 421416 TGGCGCTCTCGATGTCCTGGCCGTGGATACCGACGGCGACACGCATGAGCATGTGCTGGG 421475 Query 148307 GTCGTTCGG-CAACTTGATTGTTGATCTTGAGAAGATATCCATTTTCGAGGGTTTTGTAA 148365 |||| |||| || |||| |||||| ||| || || | ||||| || ||| | Sbjct 421476 GTCGCTCGGTCACCTTG-CCGTTGATGCGGAGGAGGTAGGAACGCTCGAGAGTCTTGAAG 421534 Query 148366 CCAAAGTACTTGTAATCAAAATCTAGCTCGTAAGCGATGGCCG 148408 |||||| | ||||| | || || ||||||| |||||||| Sbjct 421535 CCAAAGAAGTTGTAGTGGAAGTCGCGCTCGTAGATGATGGCCG 421577 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476609424623280