Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20esculenta_20[genbank_20GCA_5F000819925.1_202015-01-16] 298 sequences; 20,196,985 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq236 87.8 2e-12 >seq236 Length=132806 Score = 87.8 bits (96), Expect = 2e-12 Identities = 129/182 (71%), Gaps = 2/182 (1%) Strand=Plus/Plus Query 110712 GCTCGATGATATTATTGTTCACGATGACGTCGGCGGCAGCGAAAAAGGCGAGAACGTGTT 110771 |||||| | || | ||| ||||| |||||| || ||||| |||||||| ||||| Sbjct 4003 GCTCGACAAGGTTCTCGTTGACGATACCGTCGGAAGCGGCGAAGAAGGCGAGGACGTGGG 4062 Query 110772 TAAGAAAGAATCGTTCCTTGTCGTTCAGTTTATTGTTCCAGTCTTCAAAGTCCTTGGACA 110831 | ||| || || |||| ||||| || |||| ||| || | || |||||||||| Sbjct 4063 AGATGAAGTGACGCTCGTTGTGATTCAGCTTGTTGTCCCAATCGTGAAGATCCTTGGACA 4122 Query 110832 TGTCGATCTCTTCGACCTTCCAGTGACAATCGACCGCCTTCTTGTACGATTGCCAAAGAT 110891 ||| ||||| ||| | ||||| || | | |||||||||||| ||||| |||| Sbjct 4123 GGTCAATCTCCTCGGCGGTCCAGAAGGAAGCCTCAGCCTTCTTGTACATTTGCC--AGAT 4180 Query 110892 CT 110893 || Sbjct 4181 CT 4182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445092742023360