Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20esculenta_20[genbank_20GCA_5F000819925.1_202015-01-16] 298 sequences; 20,196,985 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq247 86.0 7e-12 >seq247 Length=126104 Score = 86.0 bits (94), Expect = 7e-12 Identities = 417/662 (63%), Gaps = 36/662 (5%) Strand=Plus/Minus Query 146872 ATCTTGAGCTTGGGGAAGGGTCGGGGGTTCCTGGCC-AGCTGAATTTTCAGGGGCTCCAC 146930 || ||||| ||||||||||| | | ||||| | | || ||||| || || || ||||| Sbjct 87570 ATGTTGAGTTTGGGGAAGGG-CAGAGGTTCACGTTCGAGTTGAATCTTGAGTGGTTCCAC 87512 Query 146931 GTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGGCTTAAGGCC 146990 |||| |||||| || |||| |||| | | || | | | ||| | | Sbjct 87511 ATGGTCCTTGTAGACATGGACGTCGCCCATAGAAAGGACGAGTTGCTTCGGTTCGCAATC 87452 Query 146991 GGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGGACCCC 147050 || || | || | |||||| || | ||| | |||||| || |||||||| || || || Sbjct 87451 AGTAACTTTTGCAATCATGTACGTTAACAGAGCGTAGCTTGCAATGTTGAATGGAACGCC 87392 Query 147051 CAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAG--------------CTCC 147096 || || | || | || | ||||||| || |||||||| |||| Sbjct 87391 TAGACCGAGATCGCAAGAACGTTGGTACATTTGACACGAGAGTTGCTTCTTCCCCTCTCC 87332 Query 147097 CC----------------GTCGGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAG 147140 || || || ||| | || || || | |||||||| || || || Sbjct 87331 CCTGGCATAAGCGTCGAGGTTGGAGACGAAGAATTGACAAAACATGTGGCAAGGGGGGAG 87272 Query 147141 CGCCATGGCGGGCAGGTCCGCGGGGTTCCAGGCCGAGACCACCAGCCGCCTGCTCTCG-G 147199 |||||| || || || ||| ||||| || || | | || | | || | Sbjct 87271 GGCCATGAGGGAGAGATCTTTGGGATTCCATGCAATGAGGAGGATTCGTC-GATCGGTAG 87213 Query 147200 GGTTCCTCTTAATCTCTTCGATAACCCACCTCAGCTGGTCCACGCCCTGGCCCCCGTAGT 147259 |||| | || |||| ||||| || | ||| ||||| ||||| ||| ||| | Sbjct 87212 GGTTGTTTTTGATCTTGTCGATCACATCGCGCAGTTGGTCGACGCCTTGGTTGGTGTAAT 87153 Query 147260 TTGTCCCGCAGTCCACGTACCTGGCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCC 147319 | || ||||||| | ||| ||| |||||||| | ||| ||||||||||| || || | Sbjct 87152 TCGTGTCGCAGTCGATGTAATCGGCGCCAAAGTGACGCCATTGGAAGCCGTAGACGGGAC 87093 Query 147320 CCAGGTCGCCGGGCTTTCTGTGCGAGAAGCCCGCCCG-CTTGAGAAACTCGGGGGACCCG 147378 | ||||| ||| |||||| | || || || | |||||| || | || ||| Sbjct 87092 CGAGGTCTCCGACTCGTCTGTG-TTGGAGATTGCGCGAGTCGAGAAAGTCACGCGATCCG 87034 Query 147379 TGGGCGTCCCAGATGCCCACTCCCTTGGCGGAGAGCTCCTTAGAGTCCGTGGAGCCCCGG 147438 | | |||||||||| || || ||| | | ||| ||| ||| || ||| Sbjct 87033 TTGCCGTCCCAGATATGAACGCCATTGTCAGTGAGGAGCTTGCTGTCGGTTTTGCCGGCT 86974 Query 147439 ATGAACCAGAGCAGCTCCTCCAAAACCCCCCTCCAAAAGACCCTCTTGGTGGTCAGCAGG 147498 | |||||||||||| || || | || || | | ||||| | |||||||| |||| | Sbjct 86973 ACGAACCAGAGCAGTTCTTCGAGGACGCCTCGGAAGAAGACTCGTTTGGTGGTGAGCAAG 86914 Query 147499 GG 147500 || Sbjct 86913 GG 86912 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583485826507200