Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20esculenta_20[genbank_20GCA_5F000819925.1_202015-01-16] 298 sequences; 20,196,985 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq236 224 1e-52 seq79 179 5e-39 seq57 114 2e-19 seq277 96.9 5e-14 >seq236 Length=132806 Score = 224 bits (248), Expect = 1e-52 Identities = 387/548 (71%), Gaps = 27/548 (5%) Strand=Plus/Minus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| |||||||| || ||||| ||||| ||||| ||||||||||||||| | |||| Sbjct 4181 GATCTGGCAAATGTAC-AAGAAGGCTGAGGCTTCCTTCTGGACCGCCGAGGAGATTGACC 4123 Query 1455835 TCGGCGCCGA----CACGGTCCACTGGGTGTC---GCTGAGCGACGACGAGCGCCATTTC 1455887 | | || |||| | |||| ||||| || ||||||| || ||| Sbjct 4122 TGTCCAAGGATCTTCACGAT----TGGGACAACAAGCTGAATCACAACGAGCGTCACTTC 4067 Query 1455888 ATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGC 1455947 ||| |||||||||||||| || |||||| ||| || ||||| ||||||||| | Sbjct 4066 ATCTCCCACGTCCTCGCCTTCTT-CGCCGCTTCCGACGGTATCGTCAACGAGAACCTTGT 4008 Query 1455948 CGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGAT 1456007 || || || | ||||| || | ||||| || | || || || |||||||| Sbjct 4007 CGAGCGTTTCAGCTCCGAGGTGCAGGCCGCCGAGGCTCGATGCTTCTATGGTTTCCAGAT 3948 Query 1456008 CGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGA 1456067 | || || ||||||||| || ||||||||||| || |||||||||||| || || Sbjct 3947 CATGATGGAGAACATCCACAGCGAGACCTACTCGCTGCTCATCGACACCTACATCCGCGA 3888 Query 1456068 CCCGGTCGAGAAGGACCA---CCTCTTTCGCGCCATCGACACGGTGCC-GTCGGTGAGGA 1456123 || |||| || | | ||||||| ||| |||| || | || |||| |||| Sbjct 3887 GCC---CGAGCAGCGCGAGTTCCTCTTTGACGCTGTCGAGACAATCCCCGTCGTCAAGGA 3831 Query 1456124 AAAAGGCCGACTGGGCGATGAAGTGGATCAACAAG-GAGGGCCTCGACACTTTGCCGAGC 1456182 || |||||||||||| | ||||||| | | || | || || ||| ||||||| Sbjct 3830 GAA-GGCCGACTGGGCTCTTCGCTGGATCAGCGACCGACGCGCT--AC-CTTCGCCGAGC 3775 Query 1456183 GGCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCT 1456241 | ||||| | ||||||||| || ||||||||||| ||||| ||| ||| | |||||| Sbjct 3774 GTCTCGTTGCCTTTGCCGCCGTTGAGGGCATCTTCTTCTCTGGCTCCTTCGCCTCCATCT 3715 Query 1456242 TTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACGAATTTATCAGT 1456301 | |||||||||||||| || || |||||||||| || ||| ||||||| | ||| Sbjct 3714 TCTGGCTCAAGAAGCGTGGTCTTATGCCCGGTC-TCACCTTCTCCAACGAACTCATCTCG 3656 Query 1456302 CGCGACGA 1456309 || ||||| Sbjct 3655 CGTGACGA 3648 >seq79 Length=472637 Score = 179 bits (198), Expect = 5e-39 Identities = 277/390 (71%), Gaps = 19/390 (5%) Strand=Plus/Minus Query 259795 CGAGCGGCCCCAGTATATGCTCATGCGTGTCGCCCTTGGCCATTATGGGTTTGCCGACGT 259854 |||||| |||||| | |||||||||||||||||| | || || || | ||| | Sbjct 421483 CGAGCGACCCCAGCACATGCTCATGCGTGTCGCCGTCGGT-ATCCACGGCCAG--GACAT 421427 Query 259855 CGACAATGCGCTGGAGCACGTGCTCGCCACCTACGAGGCCATGTCGCAGCAGTTGTTCAC 259914 ||| | |||| || ||| |||||| | |||||||||| ||| || || Sbjct 421426 CGAGA--GCGC-----CA-----TCGAAACCTACAACCTCATGTCGCAGAAGTGCTTTAC 421379 Query 259915 CTCAGCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTT 259974 | || ||||||| ||||| || ||||| || || | ||| ||| |||||||| || Sbjct 421378 CCACGCTTCGCCCACTCTCTTCAACGCCGGGACACCACACCCCCAGCTCTCGTCGTGTTT 421319 Query 259975 TCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGC 260034 || | |||||||| ||| |||||||| |||||||| ||||| |||||| || || Sbjct 421318 CCTCGTCACCATGAAGGACGACTCGATCGATGGCATCTACGACACCCTCAAGACCTGTGC 421259 Query 260035 GCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGG 260094 | ||||||||| | ||||| || |||||| | | ||| | || | | || Sbjct 421258 CATGATCTCCAAGACTGCCGGTGGTATCGGTCTCAACATCCACTGCATCCGAGGTACTGG 421199 Query 260095 CGCCTACGTGGCGGGCACCAACGGCCAGTC--CAACGGCCTTGTGCCCATGCTTCGCGTT 260152 | | ||| | || ||||||||||| ||| |||||| | ||||||||||||||||| Sbjct 421198 CTCGTACATTGCCGGCACCAACGGT--GTCAGCAACGGTATCGTGCCCATGCTTCGCGTC 421141 Query 260153 TTTAACGACACGGCGCGCTACGTCGACCAG 260182 || ||| ||||||| ||||||||||||||| Sbjct 421140 TTCAACAACACGGCTCGCTACGTCGACCAG 421111 Score = 102 bits (112), Expect = 1e-15 Identities = 336/517 (65%), Gaps = 26/517 (5%) Strand=Plus/Minus Query 261788 GGCGGCGGCAAGCGCAAGGGCGCCTTTGCCTGCTACCTGGAACCGTGGCACGCCGACCTC 261847 || ||| |||||| || ||||||||| |||| | || || |||||| | || | Sbjct 421110 GGTGGCAACAAGCGTCCCGGTGCCTTTGCCATCTACATTGAGCCTTGGCACTCGGATGTG 421051 Query 261848 ATCAACTGGCTGGACCTCAAAAAGAACCACGGCAAGGGAGGGGGAGAACCGGGCGCGCGC 261907 || | | || |||||| ||||||||||| |||| ||| || | | || || Sbjct 421050 TTCGAGTTCCTCGACCTCCGCAAGAACCACGGTAAGG-AGGAGGTGC-----GTGCCCGA 420997 Query 261908 GATCTCTTTTACGGCCTGTGGACGTGCGACCTGTTTATGCGCCGCATGGT-GACCGG--C 261964 || ||||| |||| || ||| |||||| || ||| | ||| || | | | Sbjct 420996 GAGCTCTTCTACGCACTCTGGGTTCCCGACCTCTTCATGAAGAG---GGTCGAGCAGAAC 420940 Query 261965 CGCGACTGGTCGCTCTTTTGCCCGTCCGAGGCGCCCGGCCTGCACGAATGCTATGGCGCG 262024 | |||||||||||| | ||||| |||| ||||| || ||| |||||||| | Sbjct 420939 GGAGACTGGTCGCTCATGTGCCCCAACGAGTGCCCCGGTCTTGCCGACTGCTATGGTGAC 420880 Query 262025 GCCTTTGACGCCCTCTATGAGNNNNNNNNNNNNNNNNNNNNNNC---GCGGACCGTCGTG 262081 | ||||| |||||| ||| | ||| |||||| | Sbjct 420879 GAGTTTGAGCGCCTCTACGAGCGCTACGAGGCCGAGGGTCGTTCCAAGCGCACCGTCAAG 420820 Query 262082 CCCGCACGACAGATCTGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTAC 262141 | || || || |||||| ||||| ||| | | || | |||||| || | || | | Sbjct 420819 GCT-CA-GA-AGCTCTGGTACGCCATCCTCGAGTCGCAGACCGAGACTGGTAACCCGTTC 420763 Query 262142 ATGGTCTACAAGGACGCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCACGACA 262201 || |||||||||| || | ||||| | ||||||||| ||||||| ||||||| | | Sbjct 420762 ATCCTCTACAAGGATGCTGCCAACCGCAAGAGCAACCAGAAGAACCTCGGCACCATCA-A 420704 Query 262202 GAGG-CCAACCTGTGCACCGAGATCGTCCAGTTTTCGTCGCCCACCGAGGCAAGTGTGTG 262260 | | |||||||||| ||||||||| || ||| |||| ||||| |||||| Sbjct 420703 GTGCTCCAACCTGTGTACCGAGATCATCGAGTACAGTGCGCCAGACGAGGTCGCTGTGTG 420644 Query 262261 CAACCT---CTCGAGCGTGGCCCTGCCCAAGTTTGTC 262294 |||||| ||||| | || ||||||| |||| || Sbjct 420643 CAACCTTGCCTCGA---TTGCGCTGCCCACGTTTATC 420610 >seq57 Length=374387 Score = 114 bits (126), Expect = 2e-19 Identities = 326/491 (66%), Gaps = 29/491 (6%) Strand=Plus/Plus Query 1600258 CTCCATCTCTCCAAGGCGGAAGCCGCCCGAGCGCGAGCGGCCCTCGACCGGCTGCTTGGT 1600317 |||||||||||| | || | ||||| || || ||||| || ||||||||| || Sbjct 303704 CTCCATCTCTCCGAAACGCAGACCGCCTCCACGTGATCGGCCTTCCACCGGCTGCCGCGT 303763 Query 1600318 GAGCATCTGGACGGGGCCGCGTGGTCGGGCGTGAATCTTGTCGATGGCCACGTGGCGCAG 1600377 || ||||| || || || || | ||| | ||| ||||| ||| ||| ||| || Sbjct 303764 CAGGATCTGCACCGGTCCTCGCGCTCGAGAGTGGATCTTATCGTCCACCATGTGCTTGAG 303823 Query 1600378 GGCCTGGTAGTAGACCGGCGCCGTAAAGATCAACGCCTCCATGGGCTCGC---CGGTGTG 1600434 ||||||||| ||| || | | | ||||| ||| || || | ||||| Sbjct 303824 ACGCTGGTAGTACGTCGGTCCCAAGTACACCTGCGCCTGCAT---CTTGCGACCTGTGTG 303880 Query 1600435 CGGGTGGTAGAGCACCTCCTTGCCGTAGCG-CTCGCATCCGTGGCGAGCCAACTCGG--C 1600491 |||||| | ||||||| ||| ||| || | | || ||| || | || | Sbjct 303881 GCCGTGGTACATCACCTCCA-GCCCACGCGACTGGTAGCCCAGGC----CACGTAGGATC 303935 Query 1600492 GGCGACATCG--TCGACGGTGACGCCGCCAAAGGGCGTGCCGTCGCCCACATAGCCCTCG 1600549 | ||||| || || || |||| || || ||||| | |||||| | | |||| Sbjct 303936 GACGACACCGCCTCCACCGTGAGCTCGGTGAACGGCGTCGCATCGCCCTCCTGGCCC--- 303992 Query 1600550 CGGCAG----GCCACCTTGCCCAGGAGGGCCTCCATCATCTTGCCCATGGTCATGCGCGA 1600605 | ||| ||||||||| || || ||| | || | || || ||||||||||| Sbjct 303993 -GACAGCGCTGCCACCTTGGACAACAGACACTCGACCAAGTGTCCGATCGTCATGCGCGA 304051 Query 1600606 CGGGATGGCGTGCGGGTTGATCACAATGTCGGGCGTGGCACCGCCGCGAGGCGACCAGGG 1600665 |||||| |||||||||||||| | |||||| || || |||| || | ||| | || Sbjct 304052 CGGGATCGCGTGCGGGTTGATGATAATGTCCGGTGTCACACCTTCG---GCCGAGAACGG 304108 Query 1600666 CATGTCCT-CGGTGGAGCGCACGCTGCCCACGGTGCCCTTTTGGCCGTGGCGCGACGACA 1600724 |||||||| | | || | | |||| | |||||||| |||||||||||||||| | Sbjct 304109 CATGTCCTCCTGCCGA-TACGTGATGCCGATCGTGCCCTTCTGGCCGTGGCGCGACGCAA 304167 Query 1600725 GTTTGTCGCCC 1600735 ||||||||| Sbjct 304168 ACTTGTCGCCC 304178 >seq277 Length=433459 Score = 96.9 bits (106), Expect = 5e-14 Identities = 134/186 (72%), Gaps = 4/186 (2%) Strand=Plus/Plus Query 724959 TCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGC 725018 || |||||| ||||| | || | |||||||| ||| | ||||| |||| ||||||| | Sbjct 196502 TCGAACAAGGCCATGGCCATTCTCAACTCGTTCGTCCAGGACATCTTCGAGCGCATCGCC 196561 Query 725019 ACCGAGGCCGGTCGC--CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGA 725076 || |||||| ||| || || || ||||||| ||| ||| |||| |||| Sbjct 196562 ACTGAGGCC--TCGAAGCTCGCTTCCTACAACAAGAAGTCCACCATCTCGTCGCGAGAGA 196619 Query 725077 TCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGG 725136 |||||||||| || ||||| ||| | | ||| || || ||| |||||| |||| || | Sbjct 196620 TCCAGACCGCTGTCCGCCTCATCCTACCCGGTGAGCTATCCAAGCACGCTATCTCTGAAG 196679 Query 725137 GCACCA 725142 | |||| Sbjct 196680 GAACCA 196685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177782457352276