Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20esculenta_20[genbank_20GCA_5F000819925.1_202015-01-16] 298 sequences; 20,196,985 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq1 143 3e-29 seq79 129 6e-25 seq247 100 3e-16 seq226 100 3e-16 >seq1 Length=1882320 Score = 143 bits (158), Expect = 3e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 |||||||| || ||||||||||| ||||||||||||||| || |||| | ||| || Sbjct 161289 ACGAGGTGGAGAGTGGATTCCTTCTGAATGTTGTAGTCGGAAAGGGTGCGGCCGTCTTCC 161348 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 ||||| ||||| ||||| || | |||||||| || || || || || || || || ||| Sbjct 161349 AGCTGCTTGCCGGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATTCCCTCCTTGTCCTGA 161408 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684 || || ||||| ||| | ||||| || || || || ||||| |||||||| ||| Sbjct 161409 ATCTTGGCCTTGACGTTGTCAATGGTGTCCGAAGACTCGACTTCGAGGGTAATGGTCTTA 161468 Query 134685 CCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || || || || || |||||||| Sbjct 161469 CCTGTCAAGGTCTTGACAAAGATTTGCAT 161497 Score = 113 bits (124), Expect = 5e-20 Identities = 158/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | ||| ||||| || ||||| ||||| || ||||||||||| || |||| || Sbjct 79430 AGACGGAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGA 79371 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||| |||||||| || || || || || | |||||||| || || || || || || Sbjct 79370 CCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCAGGGGGGATTCCCTCC 79311 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || || || || ||||| ||| | ||||| || || ||||| || || || Sbjct 79310 TTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCCACCTCAAGGGTG 79251 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 ||||| ||||| || | || || || || || ||||| ||| Sbjct 79250 ATGGTCTTACCCGTAAGGGTCTTCACAAAGATCTGCATGTTG 79209 >seq79 Length=472637 Score = 129 bits (142), Expect = 6e-25 Identities = 903/1440 (63%), Gaps = 23/1440 (2%) Strand=Plus/Minus Query 7537 ATCAACGGCGAATGCG-CGGAACGAATTCAACACATGCTGTTGCGCGTGGCGGTGGGCAT 7595 ||||||||| || | | | || ||| || |||||||| |||| || || || || || Sbjct 421500 ATCAACGGC-AAGGTGACCGAGCGACCCCAGCACATGCTCATGCGTGTCGCCGTCGGTAT 421442 Query 7596 TCACGGCGAAGACATTGACGCCGCCTTGGAAACGTACCAAATGATGTCTTTGAAACAGTT 7655 |||||| | ||||| || |||| | ||||| ||| | | ||||| ||| || Sbjct 421441 CCACGGCCAGGACATCGAGAGCGCCATCGAAACCTACAACCTCATGTCGCAGAAGTGCTT 421382 Query 7656 TACGCACGCTTCGCCCACCATGTTTGCCGCGGGCACA-AACGCGCCTCAATTGTCCTCGT 7714 ||| |||||||||||||| | || ||| || ||| || | || || | || |||| Sbjct 421381 TACCCACGCTTCGCCCACTCTCTTCAACGCCGGGACACCACAC-CCCCAGCTCTCGTCGT 421323 Query 7715 GTTTTTTGCTAACCATGCGCGAAGACAGCATCGACGGCATTTACAACACGCTGCGCGA-T 7773 |||| | | |||||| || ||| ||||| ||||| ||| |||| || | || Sbjct 421322 GTTTCCTCGTCACCATGAAGGACGACTCGATCGATGGCATCTACGACACCCT-CAAGACC 421264 Query 7774 TGCGCCAATATTTCCAAATACGGCGGCGGAATAGGTCTGAACGTAAACGACGTGCGCGCC 7833 || |||| || ||||| | ||| || || ||||| ||| | || | | || | Sbjct 421263 TGTGCCATGATCTCCAAGACTGCCGGTGGTATCGGTCTCAACATCCACTGCATCCGAGGT 421204 Query 7834 AACGGTAGCCGCATCGTGTCCACCAACGGAAAAGCCAGCGGTTTAGAGCCCATGTTGCGC 7893 | || ||| | ||||||||| || |||| | | ||||||| | ||| Sbjct 421203 ACTGGCTCGTACATTGCCGGCACCAACGGTGTCAGCAACGGTATCGTGCCCATGCTTCGC 421144 Query 7894 GTGTTCAATAACGCGGTGCGACATGTAGACCAGGGGGG---AAAGCGCAAAGGCGCCGCT 7950 || ||||| ||| ||| || | || |||||||| || ||||| || ||| | Sbjct 421143 GTCTTCAACAACACGGCTCGCTACGTCGACCAGGGTGGCAACAAGCGTCCCGGTGCCTTT 421084 Query 7951 GCCATCTATTTGGAGCCGTGGCACGCGGACATTTACGCAGTGCTAAATCTGCGTCGCAAC 8010 |||||||| | ||||| |||||| |||| | | || | || | || || ||| Sbjct 421083 GCCATCTACATTGAGCCTTGGCACTCGGATGTGTTCGAGTTCCTCGACCTCCGCAAGAAC 421024 Query 8011 ATGGGTTGCGAAGACAGCAAAGCGCGCGATCTATTCTTCGGATTGTGGGTGCCCGATCTG 8070 ||| || || || || || || |||| || | | ||||| ||||| || Sbjct 421023 CACGGTAAGGAGGAGGTGCGTGCCCGAGAGCTCTTCTACGCACTCTGGGTTCCCGACCTC 420964 Query 8071 TTTATGAGGCGCGTTCATTTCGACGCACAATGGTCGCTCATGTGCCCCGATCGTTGCCCT 8130 || |||| | | || | ||| | | |||||||||||||||||| | ||||| Sbjct 420963 TTCATGAAGAGGGTCGAGCAGAACGGAGACTGGTCGCTCATGTGCCCCAACGAGTGCCCC 420904 Query 8131 TTATTAAAAAACGTTTACGGTTCAAAATTTGAACAATTGTACAAACAATACGAACACGAC 8190 | || || ||| | ||||| | | ||| | | ||||| ||| Sbjct 420903 GGTCTTGCCGACTGCTATGGTGACGAGTTTGAGCGCCTCTACGAGCGCTACGAGGCCGAG 420844 Query 8191 GGCGCGTACGTGCGGCAAGTGAAAGCGCGCGACCTGCACCGCGCCATTATCGAATGTCAA 8250 || | | ||| || || || | | || |||||| |||| | || Sbjct 420843 GGTCGTTCCAAGCGCACCGTCAAGGCTCAGAAGCTCTGGTACGCCATCCTCGAGTCGCAG 420784 Query 8251 AACGAAACCGGTATGCCGTACATGCTGTACAAAGACGCTTGCAACGCCAAAAGCAATCAA 8310 | ||| || |||| |||| ||| || ||||| || ||| |||| ||| ||||| || Sbjct 420783 ACCGAGACTGGTAACCCGTTCATCCTCTACAAGGATGCTGCCAACCGCAAGAGCAACCAG 420724 Query 8311 AGCAACGTGGGCACCATTTGTTGCAGCAATCTGTGCGCTGAAATTGTACAGTACAGCGCG 8370 | ||| | |||||||| ||| ||| ||||| | || || | ||||||| ||| Sbjct 420723 AAGAACCTCGGCACCATCAAGTGCTCCAACCTGTGTACCGAGATCATCGAGTACAGTGCG 420664 Query 8371 CCCGACGAAGTGGCCGTTTGCAATCTAGCGTCG-GTGTGTTTAAACGCGTTCGTTGATCG 8429 || ||||| || || || ||||| || || ||| || | | || |||| |||| Sbjct 420663 CCAGACGAGGTCGCTGTGTGCAACCTTGCCTCGATTGCGCT-----GCCCACGTTTATCG 420609 Query 8430 A--CGCTCA--AACACTTACGACTTTGAACAATTGAAAAACGCCGTGCAAGTGA-CGGTA 8484 | || ||| || || ||||||||| | | | | || | | | | | | | | Sbjct 420608 ACCCGGTCACCAAGACGTACGACTTTAAGCGTCTCCACAAGGTTGCCAAGGCCATCTGCA 420549 Query 8485 CGCAATTTAGATCGCATCATTGATGTCAATTTTTATCCCTTGGAAGAAGCGCGCGTATCG 8544 | || | | ||||| || |||| | || ||| | || ||||| ||| ||| Sbjct 420548 AG-AACCTCAACAAGATCATCGACATCAACTACTACCCCGTCGAGGAAGCTCGCAGATCC 420490 Query 8545 AACATGCGCCACAGACCCGTTGGCGTGGGCGTGCAAGGTCTGGCCGACGCGTTTGCCATG 8604 |||||||||||| ||||| | || | || || || ||||| || ||||| || || Sbjct 420489 AACATGCGCCACCGACCCATCGGTATCGGTGTTCAGGGTCTTGCTGACGCCTTCATGATC 420430 Query 8605 TTGCGCCTCCCCTACGAAAGCCAAGAAGCGCGCATGCTCAACATAAAAATAGCGGAAACG 8664 || || | | | ||| | || || ||| || ||| | | || || || Sbjct 420429 ATGGGCTACGCGTTCGAGTCGCCCGAGGCTCGCCGACTTAACGTGCAGATCTTTGAGACT 420370 Query 8665 GTGTATTACGGCGCATTAGAAGCCAGC-TGTCAACTTGCCCGAGAATTGGGCACGTACGA 8723 | || ||| || | | ||| | | || | || || | ||| ||||||||||| Sbjct 420369 ATTTACCACGCTGCGCTCG-AGCGATCGTGCGAGCTGGCTCAAGAGCACGGCACGTACGA 420311 Query 8724 ATCGTACGCGGGCAGCCCTGCCAGCCGCGGAATATTGCAATACGACATGTGGAATGTCAC 8783 ||||||| ||| ||||| | || |||| || ||||||||| |||||| Sbjct 420310 GACGTACGCCGGCTCGCCTGCTTCGCAGGGTGAGCTGCAGTATGACATGTGGGGTGTCAC 420251 Query 8784 GCCCACCTCTTTGTGGAATTGGAGCGATTTGAAACGCAAAATTGCTCAATTCGGTTTGCG 8843 || | ||||| | ||| || | || ||| ||||| | |||| |||| Sbjct 420250 CCCATCGGACCTGTGGGACTGGGCTGAGCTCAAGGCCAAGATTGCCAAGCACGGTCTGCG 420191 Query 8844 CAATTCGCTGTTGGTGGCTTACATGCCCACCGCCACGACTGCTCAAATAATGGGAAACAA 8903 ||| || || | | || |||||| |||||| |||| ||| || | || ||| Sbjct 420190 CAACTCCTTGCTCCTCGCCCCCATGCCTACCGCCTCGACGAGTCAGATTCTCGGCTTCAA 420131 Query 8904 CGAATCCTTTGAGCCGTTCACCAACAACGTGTACGTGAGACGAGTGTTGGCCGGCGATTT 8963 ||| | ||||||||||| ||| |||| | ||| | | || ||| | ||||| || || Sbjct 420130 CGAGTGCTTTGAGCCGTACACATCCAACATCTACTCGCGCCGTGTGCTCGCCGGAGAGTT 420071 >seq247 Length=126104 Score = 100 bits (110), Expect = 3e-16 Identities = 133/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 || ||||| || || || ||||| || ||||||||||| | |||| | ||| ||| Sbjct 71176 ACAAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCCTCG 71117 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 ||||| || || || || |||| |||||||| ||||| || || || || || || ||| Sbjct 71116 AGCTGCTTACCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGAATACCCTCCTTATCCTGA 71057 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684 || || || || ||| | ||||| || || ||||| || || |||||||| ||| Sbjct 71056 ATCTTGGCCTTAACATTGTCGATGGTGTCCGAGGACTCCACCTCAAGGGTAATGGTCTTA 70997 Query 134685 CCGGT 134689 || || Sbjct 70996 CCTGT 70992 >seq226 Length=271753 Score = 100 bits (110), Expect = 3e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 134484 TTTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCG 134543 || || || | ||| || | ||| ||||| | ||| ||||| |||||||||||||| Sbjct 171303 TTACCGCCACGGAGACGGAGCACAAGGTGCAAGGTGCTCTCCTTCTGAATGTTGTAGTCC 171244 Query 134544 CCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGC 134603 | ||| | || |||||||| || |||||||| || | ||| ||||| || || Sbjct 171243 GAGAGCGTGCGGCCATCCTCGAGCTGCTTTCCTGCAAAGATGAGACGTTGCTGGTCAGGG 171184 Query 134604 GGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCC 134663 || || ||||| || || ||||| || ||||| ||| | ||||| || || || Sbjct 171183 GGAATACCTTCCTTGTCCTGAATCTTGGCCTTGACATTGTCAATGGTGTCTGAAGACTCG 171124 Query 134664 ACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || | ||| ||||| || || || || || || || || || ||||| Sbjct 171123 ACCTCCAAAGTGATGGTCTTGCCAGTCAAGGTCTTGACAAAGATCTGCAT 171074 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505396517390960