Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20esculenta_20[genbank_20GCA_5F000819925.1_202015-01-16] 298 sequences; 20,196,985 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq236 109 2e-18 >seq236 Length=132806 Score = 109 bits (120), Expect = 2e-18 Identities = 357/544 (66%), Gaps = 17/544 (3%) Strand=Plus/Minus Query 443337 TTTTGGACCATGGAGGAGATTGATCTCTCCAAGGACTTGGCCGATTGGAACGAACGA-CT 443395 || |||||| ||||||||||| || |||||||| | ||||||| || ||| | || Sbjct 4147 TTCTGGACCGCCGAGGAGATTGACCTGTCCAAGGATCTTCACGATTGGGAC-AACAAGCT 4089 Query 443396 ATCTAGCCATGAACGCGATTTCTTCAAATGCATCTTGGCCTTCTTTGCACCGAGCGACGG 443455 | | | || || | ||| || | || | |||||||| || | |||||| Sbjct 4088 GAATCACAACGAGCGTCACTTCATCTCCCACGTCCTCGCCTTCTTCGCCGCTTCCGACGG 4029 Query 443456 TATCGTCGGTGAGAATCTGGTGACGCGTTTC---TACGAAATGGTAGTGTACACCGAGGC 443512 ||||||| ||||| || || ||||||| | ||| ||| | | ||||||| Sbjct 4028 TATCGTCAACGAGAACCTTGTCGAGCGTTTCAGCTCCGA---GGTGCAGGCCGCCGAGGC 3972 Query 443513 CCGCTACTTCTACGCGTTCCAAGCCGCAATGGAGAACATTCACGCCGAGGTCTACAGTCA 443572 || | |||||| | ||||| | ||||||||||| ||| |||| |||| | Sbjct 3971 TCGATGCTTCTATGGTTTCCAGATCATGATGGAGAACATCCACAGCGAGACCTACTCGCT 3912 Query 443573 GTTGATCAAGACACTAATTCCGAACGAAGACGAACAGCG---GTCCATCTTCTCATCGTT 443629 | | ||| | || ||| |||| ||| ||| ||||| || | |||| | | Sbjct 3911 GCTCATCGACAC-CTACATCCG--CGAGCCCGAGCAGCGCGAGTTCCTCTTTGACGCTGT 3855 Query 443630 CATGACCACGCCAGGCATCACTGAAAAGACTCGCTGGGCAAAACAGTGGCTCGAACGAGA 443689 | ||| | || | | ||| || ||| | |||||| | ||| || | ||| Sbjct 3854 CGAGACAATCCCCGTCGTCAAGGAGAAGGCCGACTGGGCTCTTCGCTGGATC-AGCGACC 3796 Query 443690 AAATCTC-AGCTTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTA 443748 | | | | ||||| |||||| || || || ||||| | || || || | || || Sbjct 3795 GACGCGCTACCTTCGCCGAGCGTCTCGTTGCCTTTGCCGCCGTTGAGGGCATCTTCTTCT 3736 Query 443749 GCGGCAGCTTTAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACC 443808 ||| ||| ||||||||||||||| | || |||||||| ||||||| |||||| ||| Sbjct 3735 CTGGCTCCTTC-GCCTCCATCTTCTGGCTCAAGAAGCGTGGTCTTATGCCCGGTCTCACC 3677 Query 443809 TTTAGTAACGAACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTC 443868 || |||||||| ||| || ||||||||| | || |||||| || || || ||| Sbjct 3676 TTCTCCAACGAACTCATCTCGCGTGACGAGGGTCTCCACACCGACTTTGCTTGCCTCCTC 3617 Query 443869 TACA 443872 | || Sbjct 3616 TTCA 3613 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588329935534610