Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20esculenta_20[genbank_20GCA_5F000819925.1_202015-01-16] 298 sequences; 20,196,985 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq79 190 3e-43 seq236 109 7e-19 >seq79 Length=472637 Score = 190 bits (210), Expect = 3e-43 Identities = 894/1397 (64%), Gaps = 37/1397 (3%) Strand=Plus/Plus Query 110707 GTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGA 110766 ||||||||| | |||||| || |||||||| || || || | || || || || Sbjct 420097 GTAGATGTTGGATGTGTACGGCTCAAAGCACTCGTTGAAGCCGAGAATCTGACTCGTCGA 420156 Query 110767 GGCTGTTGGCATTGGTGCCATCA--AAAGACTGTTACGAAGACCCTTCTCCTTGATGCGT 110824 ||| || ||||| || || | | || || ||| || ||||| | || || Sbjct 420157 GGCGGTAGGCATGGGGGCGAGGAGCAAGGA--GTTGCGCAGACCGTGCTTGGCAATCTTG 420214 Query 110825 TCCTTGAGAACATCCCAGTCGTA--GTTGAGCTTGGTTT-CACCTTCCCACATGTCAAAC 110881 ||||||| || ||||||| | | | | | || | |||| |||||||||| || Sbjct 420215 GCCTTGAGCTCAGCCCAGTCCCACAGGTCCGATGGGGTGACACC---CCACATGTCATAC 420271 Query 110882 TGAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCA 110941 || ||| | || || || || || || || | | || || || | || || ||| | Sbjct 420272 TGCAGCTCACCCTGCGAAGCAGGCGAGCCGGCGTACGTCTCGTACGTGCCGTGCTCTTGA 420331 Query 110942 GCCAATTCACA-GCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATT 111000 |||| || || | |||| || || | ||||| || || || |||||||| | | || Sbjct 420332 GCCAGCTCGCACGATCGC-TCGAGCGCAGCGTGGTAAATAGTCTCAAAGATCTGCACGTT 420390 Query 111001 CATCTCCTTG-GCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGA 111059 | || | || || || || || ||||||| | || || | || || | Sbjct 420391 AAG-TCGGCGAGCCTCGGGCGACTCGAACGCGTAGCCCATGATCATGAAGGCGTCAGCAA 420449 Query 111060 GACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAA 111119 |||| |||||||| | ||| || |||| ||| ||||| || || | || || ||| | Sbjct 420450 GACCCTGAACACCGATACCGATGGGTCGGTGGCGCATGTTGGATCTGCGAGCTTCCTCGA 420509 Query 111120 CGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTT 111179 |||| || | || |||| |||| ||| || || ||| | ||| | | | Sbjct 420510 CGGGGTAGTAGTTGATGTCGATGATCTTGTTGAGGTTCTTGCAGATGGCCTTGGCAACCT 420569 Query 111180 CATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGA 111239 || || | | | || | || || | | || | || | || || || | Sbjct 420570 TGTGGAGACGCTTAAAGTCGTACGTCTTGGTGACCGGGTCGATAAACGTGGGCAGCGCAA 420629 Query 111240 TTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTAC 111299 | || || | ||||| ||||| ||| || | ||||||| | || || |||| Sbjct 420630 TCGAGGCAAGGTTGCACACAGCGACCTCGTCTGGCGCACTGTACTCGATGATCTCGGTAC 420689 Query 111300 ATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCAT 111359 | | |||||| | ||| || || || | ||||| ||||| ||||| |||| |||| Sbjct 420690 ACAGGTTGGAGCACTTGATGGTGCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCAGCAT 420749 Query 111360 CCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCA-A 111418 |||||||||| ||| | || | || ||||| ||||| || | ||| || || | ||| | Sbjct 420750 CCTTGTAGAGGATGAACGGGTTACCAGTCTCGGTCTGCGACTCGAGGATGGCGTACCAGA 420809 Query 111419 ACATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGG 111478 | || | | || | || || |||| || ||||| |||||||| ||||||| Sbjct 420810 GCTTCTGAGCCTTG-ACGGTGCGCTTGGAACGACCCTCGGCCTCGTAGCGCTCGTAGAGG 420868 Query 111479 GCTTCAAACTCCTCACCCACCGC-GTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAG 111537 |||||||| ||| ||| || ||||| ||||| || || || || || | || Sbjct 420869 CGCTCAAACTCGTCA-CCATAGCAGTCGGCAAGACCGGGGCACTCGTTGGGGCACATGAG 420927 Query 111538 AGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGA 111597 ||||| | || | ||| |||| ||||||||| ||||| |||| ||| || | | Sbjct 420928 CGACCAGTCTCCGTTCTGCTCGACCCTCTTCATGAAGAGGTCGGGAACCCAGAGTGCGTA 420987 Query 111598 AAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTC 111657 ||||| |||| || |||| || | ||| ||||| || | || |||||||| Sbjct 420988 GAAGAGCTCTCGGGCACGCACCTCCTCCTTACCGTGGTTCTTGCGGAGGTCGAGGAACTC 421047 Query 111658 CATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGC----- 111712 | | ||||| |||||| ||||||| |||| || | | || ||||| Sbjct 421048 GAACACATCCGAGTGCCAAGGCTCAATGTAGATGGCAAAGGCACC---GGGACGCTTGTT 421104 Query 111713 -CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACC 111771 ||| | || | || ||||| || ||| ||| || ||||||||||| || | ||||| Sbjct 421105 GCCACCCTGGTCGACGTAGCGAGCCGTGTTGTTGAAGACGCGAAGCATGGGCACGATACC 421164 Query 111772 AT--CTGATTGACCATTTGTCCCCCGAA--TACGAGATTTATTGGCTCTCACATCATGGA 111827 | |||| ||| || || || || |||||| | | ||| | |||| Sbjct 421165 GTTGCTGA--CACCGTTGGTGCCGGCAATGTACGAG--CCAGTACCTCGGATGCAGTGGA 421220 Query 111828 TGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCAT 111887 ||| | || ||||| || || ||| ||||| ||||| | | || || | | Sbjct 421221 TGTTGAGACCGATACCACCGGCAGTCTTGGAGATCATGGCACAGGTCTTGAGGGTGTCGT 421280 Query 111888 AGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTC 111947 |||| || | ||| ||||| ||||| ||| || ||||| || || | ||| || Sbjct 421281 AGATGCCATCGATCGAGTCGTCCTTCATGGTGACGAGGAAACACGACGAGAGCTGGGGGT 421340 Query 111948 TTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAA-CATACCTTGGGACATC 112006 |||||| || || |||||||| || || | ||||| | || || | || ||||| Sbjct 421341 GTGGTGTCCCGGCGTTGAAGAGAGTGGGCGAAGCGTGGGTAAAGCACTTC-TGCGACATG 421399 Query 112007 TTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGC 112066 || ||| || || | | | || ||||| | |||||||| |||| ||||| ||| Sbjct 421400 AGGTTGTAGGTTTCGATGGCGCTCTCGATGTCCTGGCCGTGGATACCGACGGCGACACGC 421459 Query 112067 ATGAACATGTACTGTGG 112083 |||| ||||| ||| || Sbjct 421460 ATGAGCATGTGCTGGGG 421476 >seq236 Length=132806 Score = 109 bits (120), Expect = 7e-19 Identities = 124/165 (75%), Gaps = 1/165 (1%) Strand=Plus/Plus Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718 ||||| || |||||||||||| || || || || ||||| || |||||| ||||| Sbjct 3627 GCAAAGTCGGTGTGGAGACCCTCGTCACGCGAGATGAGTTCGTTGGAGAAGGTGAGACCG 3686 Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 122778 ||||| ||||| |||||||| | ||| | || | | ||| || || ||||||||||| Sbjct 3687 GGCATAAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGAGCCAGAGAAGAAGATG 3746 Query 122779 CCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGG-AGCG 122822 ||||| || ||||| |||| || || |||||||||| |||| Sbjct 3747 CCCTCAACGGCGGCAAAGGCAACGAGACGCTCGGCGAAGGTAGCG 3791 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628029660580800