Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20esculenta_20[genbank_20GCA_5F000819925.1_202015-01-16] 298 sequences; 20,196,985 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq79 192 7e-44 seq236 136 5e-27 seq288 123 3e-23 >seq79 Length=472637 Score = 192 bits (212), Expect = 7e-44 Identities = 888/1390 (64%), Gaps = 23/1390 (2%) Strand=Plus/Plus Query 118182 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCT-GTGGA 118240 ||||| |||| ||||| |||||||||||||| ||| | || ||| | | || || || Sbjct 420098 TAGATGTTGGATGTGTACGGCTCAAAGCACTCGTTGA-AGCCGAGAATCTGACTCGTCGA 420156 Query 118241 GGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTC 118300 ||| || |||||||| || | ||| | | ||| || ||||| | | ||| | Sbjct 420157 GGCGGTAGGCATGGGGGCGAGGAGCAAGGAGTTGCGCAGACCGTGCTTGGCAATCTTGGC 420216 Query 118301 CTTGAGAGCGTCCCAGTCGTA--GTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGG 118358 |||||| | ||||||| | | | | | | | || |||||| ||| |||| Sbjct 420217 CTTGAGCTCAGCCCAGTCCCACAGGTCCGATGGGGTGACACC--CCACATGTCATACTGC 420274 Query 118359 AGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCC 118418 || ||| || || || ||||| || | | ||||| || | ||| | | | ||| Sbjct 420275 AGCTCACCCTGCGAAGCAGGCGAGCCGGCGTACGTCTCGTACGTGCCGTGCTCTTGAGCC 420334 Query 118419 AATTCGGA-GCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCAT 118477 | ||| | | |||| ||||| || ||||| || || || ||||| || | | || | Sbjct 420335 AGCTCGCACGATCGC-TCGAGCGCAGCGTGGTAAATAGTCTCAAAGATCTGCACGTTAAG 420393 Query 118478 TGCCTTGGCCTCGTCGGAATCAAACGCG-AGTCGGCACAAA-ATAAATACATCCGCGAGA 118535 | |||||| || || |||||| || | || | || || | || || ||| Sbjct 420394 TCGGCGAGCCTCGGGCGACTCGAACGCGTAGCC--CATGATCATGAAGGCGTCAGCAAGA 420451 Query 118536 CCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCCACG 118595 || || ||||||| || || || || || | ||| || || | ||||| ||| ||| Sbjct 420452 CCCTGAACACCGATACCGATGGGTCGGTGGCGCATGTTGGATCTGCGAGCTTCCTCGACG 420511 Query 118596 GGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCA 118655 || || | || | ||||| | | | || || || ||| || |||| | | | Sbjct 420512 GGGTAGTAGTTGATGTCGATGATCTTGTTGAGGTTCTTGCAGATGGCCTTGGCAACCTTG 420571 Query 118656 TGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATT 118715 || || | | || | | || | | || | || | || || || || Sbjct 420572 TGGAGACGCTTAAAGTCGTACGTCTTGGTGACCGGGTCGATAAACGTGGGCAGCGCAATC 420631 Query 118716 GACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCAC 118775 || || || || ||||||| | ||| || || ||||||| || || || || ||| Sbjct 420632 GAGGCAAGGTTGCACACAGCGACCTCGTCTGGCGCACTGTACTCGATGATCTCGGTACAC 420691 Query 118776 AAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCC 118835 | ||| || | ||| |||||||| | |||||| || || ||| ||| |||||| Sbjct 420692 AGGTTGGAGCACTTGATGGTGCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCAGCATCC 420751 Query 118836 TTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGA-C 118894 ||||| || ||| | || | || ||||| || || |||| ||| || || | ||||| | Sbjct 420752 TTGTAGAGGATGAACGGGTTACCAGTCTCGGTCTGCGACTCGAGGATGGCGTACCAGAGC 420811 Query 118895 ATCGGCAGCTGGCACAGTGGCGTTGGCTCGCCCCTCTTCCTCGTACTTTGTGTAGAGGGC 118954 || | ||| || ||| |||| || ||||| ||||||| ||||||| Sbjct 420812 TTCTG-AGCCTTGACGGTGCGCTTGGAACGACCCTCGGCCTCGTAGCGCTCGTAGAGGCG 420870 Query 118955 TTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGA 119014 |||||||| ||||| | || | || || || || | ||||| | ||| || Sbjct 420871 CTCAAACTCGTCACCATAGCAGTCGGCAAGACCGGGGCACTCGTTGGGGCACATGAGCGA 420930 Query 119015 CCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAA 119074 ||| | || || ||| |||| ||||||||||||||| || | |||||| || |||| Sbjct 420931 CCAGTCTCCGTTCTGCTCGACCCTCTTCATGAAGAGGTCGGGAACCCAGAGTGCGTAGAA 420990 Query 119075 GAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCAT 119134 ||| || || || | || || | || || || || | || | || || | Sbjct 420991 GAGCTCTCGGGCACGCACCTCCTCCTTACCGTGGTTCTTGCGGAGGTCGAGGAACTCGAA 421050 Query 119135 GATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACG---ACGACCAGC 119191 | ||||| |||||| || || | ||| | || | | || ||| ||| | Sbjct 421051 CACATCCGAGTGCCAAGGCTCAATGTAGATGGCAAAGGCACCGGGACGCTTGTTGCCACC 421110 Query 119192 CTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCATCGGA 119251 ||||| || || | || ||| ||| || || |||||||| || | |||||| | | Sbjct 421111 CTGGTCGACGTAGCGAGCCGTGTTGTTGAAGACGCGAAGCATGGGCACGATACCGTTGCT 421170 Query 119252 TTGGCCATTTGTCCCCCGAA--TACGAGACTTATTGGCTCTGACATCGTGGATGTGCATA 119309 || || || || || |||||| | | | ||| || |||||||| | | Sbjct 421171 GACACCGTTGGTGCCGGCAATGTACGAGCC--AGTACCTCGGATGCAGTGGATGTTGAGA 421228 Query 119310 CCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCA 119369 || ||||| || || ||| ||||| || || | |||| || ||||||| ||| Sbjct 421229 CCGATACCACCGGCAGTCTTGGAGATCATGGCACAGGTCTTGAGGGTGTCGTAGATGCCA 421288 Query 119370 TCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTGGGTGTA 119429 ||||||||||| |||| | | || |||||| || ||| | || || ||||| Sbjct 421289 TCGATCGAGTCGTCCTTCATGGTGACGAGGAAACACGACGAGAGCTGGGGGTGTGGTGTC 421348 Query 119430 CCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAA-CATACCTTGGGACATCTTGTCGTA 119488 || |||||||||||||| || | |||||| | || || | || ||||| || ||| Sbjct 421349 CCGGCGTTGAAGAGAGTGGGCGAAGCGTGGGTAAAGCACTTC-TGCGACATGAGGTTGTA 421407 Query 119489 GGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACAT 119548 ||| || | | || ||||| | ||||| ||||||| | ||| ||||| | ||| Sbjct 421408 GGTTTCGATGGCGCTCTCGATGTCCTGGCCGTGGATACCGACGGCGACACGCATGAGCAT 421467 Query 119549 GTATTGGGGT 119558 || |||||| Sbjct 421468 GTGCTGGGGT 421477 >seq236 Length=132806 Score = 136 bits (150), Expect = 5e-27 Identities = 130/165 (79%), Gaps = 1/165 (1%) Strand=Plus/Plus Query 130016 GCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 130075 ||||| || |||||||||||||||||| ||||||||||| || |||||| ||||| Sbjct 3627 GCAAAGTCGGTGTGGAGACCCTCGTCACGCGAGATGAGTTCGTTGGAGAAGGTGAGACCG 3686 Query 130076 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 130135 ||||| ||||| |||||||| | |||||| || | || ||||||||||||||||| Sbjct 3687 GGCATAAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGAGCCAGAGAAGAAGATG 3746 Query 130136 CCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGG-AGCG 130179 ||||| || || || |||| ||||||||| || |||| |||| Sbjct 3747 CCCTCAACGGCGGCAAAGGCAACGAGACGCTCGGCGAAGGTAGCG 3791 >seq288 Length=590259 Score = 123 bits (136), Expect = 3e-23 Identities = 260/382 (68%), Gaps = 8/382 (2%) Strand=Plus/Plus Query 179733 CTTGAGGAGCGATGGCCAGAAGTAGTGGATCATATTGAGGATGAGACCCTTAATGTGTGA 179792 |||||| ||||| || |||||| || || | ||||| |||||||||||| || || || Sbjct 298435 CTTGAGCAGCGACGGATAGAAGTGGTCGAGGAAATTGATGATGAGACCCTTGATATGAGA 298494 Query 179793 ACCATCGTTATCCGCATCCGTCATAATCATAAGCCGACCATAGCG-AAGCTCGGAAACAT 179851 |||||||| |||| ||| ||||| ||||| | | || || || ||||| | || | Sbjct 298495 ACCATCGTGATCCTGATCGGTCATGATCATGATACTTCCGTAACGCAAGCT-GTTGACGT 298553 Query 179852 CTTGATAATCCTTACCTTGTTGAAGACCCAAGATCTTCTTGAGATCATTGAACTCTTGGT 179911 | |||| | ||| || ||||| ||||| | |||| ||||| | |||| || | Sbjct 298554 CAAGATATTGCTTGCCGTGTTGCAGACCAAGAATCTCCTTGATGGCCTTGATTTCGGCAT 298613 Query 179912 TTGATGTGAGTTGCGCCACTGAAGCATCTCGGACATTTTTACACTTCCCACGGAGAGGGA 179971 | ||| ||| | || || || ||||| || | ||| || || || |||| Sbjct 298614 TCTTCATGATTTGGTCGTGAGAGGCCTCGCGGACGTTGAGAAGCTTACCTCGAAGCGGGA 298673 Query 179972 ACACACCGTAGTGATCACGACCAACCACAGAGAGACCAGCAACTGCGAGGGTCTTCGCGG 180031 | |||||||||| || | || || | | ||| | || ||||| | ||| || | Sbjct 298674 AAACACCGTAGTTGTCTCTTCCTACTTCGACAATACCGGACACGGCGAGAGACTTGGCTG 298733 Query 180032 AATCACCCTCCGTCACGATGAGCGTACA---CTTTCCAGATTGTGCCGTCCCTGCCTTGT 180088 | ||||| || || | |||||| ||||| |||| | | |||| || || |||| Sbjct 298734 AGTCACCTTCGGTGAGGATGAGGGTACAGTCCTTTGC-TTTCCTGCC--ACCAGCATTGT 298790 Query 180089 TCGCGTCGTCCAACTTGGGAAT 180110 | ||||| |||| ||||||||| Sbjct 298791 TGGCGTCCTCCAGCTTGGGAAT 298812 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618432896328880