Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20esculenta_20[genbank_20GCA_5F000819925.1_202015-01-16] 298 sequences; 20,196,985 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq79 271 9e-68 seq236 145 9e-30 seq288 134 2e-26 >seq79 Length=472637 Score = 271 bits (300), Expect = 9e-68 Identities = 813/1234 (66%), Gaps = 33/1234 (3%) Strand=Plus/Minus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 || ||| ||||| ||||||| || ||| ||||||| || || | ||||| || | | Sbjct 421476 CCCCAGCACATGCTCATGCGTGTCGCCGTCGGTATCCACGGCCAGGACATCGAGAGCGCC 421417 Query 104282 TTGGAGACATACGACAAGATGTCCCAAGGTATG-TTCATTCACGCAACACCAACCCTCTT 104340 | || || ||| || ||||| || | || || | ||||| | || || ||||| Sbjct 421416 ATCGAAACCTACAACCTCATGTCGCA-GAAGTGCTTTACCCACGCTTCGCCCACTCTCTT 421358 Query 104341 CAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 104400 ||| || || |||||| ||||| | || || ||||| || ||| ||||| || Sbjct 421357 CAACGCCGGGACACCACACCCCCAGCTCTCGTCGTGTTTCCTCGTCACCATGAAGGACGA 421298 Query 104401 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 104460 ||| ||| | || ||||| | || || | | ||||| ||||| ||| || || Sbjct 421297 CTCGATCGATGGCATCTACGACACCCTCAAGACCTGTGCCATGATCTCCAAGACTGCCGG 421238 Query 104461 GGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTA--TTCGGGGGACA 104518 ||||| || | ||||||| | ||| | | |||||| || || || Sbjct 421237 TGGTATCGGTCTCAACATCCACTGCATCCGAGGTACTGG--CTCGTACATTGCCGGCACC 421180 Query 104519 AATGGTCAATCAG--ATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCT 104576 || ||| |||| | ||||| | || ||||||||||| || ||| ||| || |||| Sbjct 421179 AACGGTG--TCAGCAACGGTATCGTGCCCATGCTTCGCGTCTTCAACAACACGGCTCGCT 421122 Query 104577 ATGTAAATCAAGCTGG------GCGTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCAT 104630 | || | || | ||| ||||| || | | || |||| ||||||| | Sbjct 421121 ACGTCGACCAGGGTGGCAACAAGCGTCCC---GGTGCCTTTGCCATCTACATTGAGCCTT 421065 Query 104631 GGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGC 104690 ||||| ||||| | | |||||||| || | || ||||| ||| | ||||||| || Sbjct 421064 GGCACTCGGATGTGTTCGAGTTCCTCGACCTCCGCAAGAACCACGGTAAGGAGGAGGTGC 421005 Query 104691 GGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGG 104750 | ||| || ||||||| ||| |||||| |||| || |||||||||||||| || ||| Sbjct 421004 GTGCCCGAGAGCTCTTCTACGCACTCTGGGTTCCCGACCTCTTCATGAAGAGGGTCGAGC 420945 Query 104751 AGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGA-TGCCGTG 104809 ||| || | ||||| ||| | || || || || || ||||| |||| ||| || Sbjct 420944 AGAACGGAGACTGGTCGCTCATGTGCCCCAACGAGTGCCCCGGTCTTGCCGACTGCTATG 420885 Query 104810 GGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCG-AC 104868 | ||| |||||||| ||| ||| ||||||| || ||||| | | ||| || Sbjct 420884 G-TGACGAGTTTGAGCGCCTCTACGAGCGCTACGAGGCCGAGGGTCGTTCCAA-GCGCAC 420827 Query 104869 GGTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACAC 104927 || ||| | || | | ||| | || || ||| |||| || ||||||||||||| | Sbjct 420826 CGTCAAGGCT-CAGAAGCTCTGGTACGCCATCCTCGAGTCGCAGACCGAGACTGGTAACC 420768 Query 104928 CATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGA 104987 | | ||| || ||||| || || |||| ||||| || || ||||| | || | Sbjct 420767 CGTTCATCCTCTACAAGGATGCTGCCAACCGCAAGAGCAACCAGAAGAACCTCGGCACCA 420708 Query 104988 TCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTG 105047 ||||| | ||||| || ||||| || ||| | || | | | ||| ||| |||| Sbjct 420707 TCAAGTGCTCCAACCTGTGTACCGAGATCATCGAGTACAGTGCGCCAGACGAGGTCGCTG 420648 Query 105048 TGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTG 105107 |||| ||||| || || || || || |||| || | | || || | || ||||| | | Sbjct 420647 TGTGCAACCTTGCCTCGATTGCGCTGCCCACGTTTATCGACCCGGTCACCAAGACGTACG 420588 Query 105108 ATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTG 105167 | | | | |||||| | ||| | || | || ||| ||||| |||| | || | Sbjct 420587 ACTTTAAGCGTCTCCACAAGGTTGCCAAGGCCATCTGCAAGAACCTCAACAAGATCATCG 420528 Query 105168 ATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTG 105227 | | || | |||||||| ||| ||||| | ||| || ||| | ||||| || || | Sbjct 420527 ACATCAACTACTACCCCGTCGAGGAAGCTCGCAGATCCAACATGCGCCACCGACCCATCG 420468 Query 105228 GTCTCGGTGTTCAGGGTCTCGCGGATGTATTCAT--TCTTTGTCGCCACGCATTTGATTC 105285 || |||||||||||||||| || || | ||||| || | | || |||| || || || Sbjct 420467 GTATCGGTGTTCAGGGTCTTGCTGACGCCTTCATGATCATGG--GCTACGCGTTCGAGTC 420410 Query 105286 CGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGA 105345 ||| || | | || | || || |||||||| || || ||||| || || || Sbjct 420409 GCCCGAGGCTCGCCGACTTAACGTGCAGATCTTTGAGACTATTTACCACGCTGCGCTCGA 420350 Query 105346 GGCGA--GTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCA 105403 |||| || | ||| |||| | | | || | || || || | | || || || Sbjct 420349 -GCGATCGTGC-GAGCTGGCTCAAGAGCACGGCACGTACGAGACGTACGCCGGCTCGCCT 420292 Query 105404 GCTTCACAAGGGGTGCTTCAATTTGATATGTGGG 105437 ||||| || || | ||| || | ||| ||||||| Sbjct 420291 GCTTCGCAGGGTGAGCTGCAGTATGACATGTGGG 420258 >seq236 Length=132806 Score = 145 bits (160), Expect = 9e-30 Identities = 128/160 (80%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 94796 CCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCT 94855 |||| || ||||| ||| | || ||||| |||||||| |||||||||||||| |||| Sbjct 3786 CCTTCGCCGAGCGTCTCGTTGCCTTTGCCGCCGTTGAGGGCATCTTCTTCTCTGGCTCCT 3727 Query 94856 TCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACG 94915 || | | || | |||||||||||||| ||||| ||||| |||||| ||||||||||| Sbjct 3726 TCGCCTCCATCTTCTGGCTCAAGAAGCGTGGTCTTATGCCCGGTCTCACCTTCTCCAACG 3667 Query 94916 AGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 | || ||||| ||||||||||| |||||| || ||||| Sbjct 3666 AACTCATCTCGCGTGACGAGGGTCTCCACACCGACTTTGC 3627 >seq288 Length=590259 Score = 134 bits (148), Expect = 2e-26 Identities = 251/364 (69%), Gaps = 6/364 (2%) Strand=Plus/Plus Query 169143 AGAAGTAGTGAATCATATTGAGAATGAGACCCTTGATGTGGGAACCGTCGTTATCGGCAT 169202 |||||| || | | ||||| |||||||||||||| || ||||| |||| ||| || Sbjct 298452 AGAAGTGGTCGAGGAAATTGATGATGAGACCCTTGATATGAGAACCATCGTGATCCTGAT 298511 Query 169203 CCGTCATGATCATGAGACGACCATACCG-AAGCTCGGAAACATCTTGATAGTCCTTACCC 169261 | ||||||||||||| || || || || ||||| | || || |||| | ||| || Sbjct 298512 CGGTCATGATCATGATACTTCCGTAACGCAAGCT-GTTGACGTCAAGATATTGCTTGCCG 298570 Query 169262 TGTTGAAGACCCAAGATCTTCTTGAGATCGTTGAACTCTTGGTTTGATGTGAGCTGTGTG 169321 ||||| ||||| | |||| ||||| | |||| || || ||| || | Sbjct 298571 TGTTGCAGACCAAGAATCTCCTTGATGGCCTTGATTTCGGCATTCTTCATGATTTGGTCG 298630 Query 169322 ACAGAGGCATCGCGAACATTCTTACACTTCCCACGAAGAGGGAAGACACCGTAGTGATCA 169381 |||||| ||||| || || | ||| || ||||| ||||| |||||||||| || Sbjct 298631 TGAGAGGCCTCGCGGACGTTGAGAAGCTTACCTCGAAGCGGGAAAACACCGTAGTTGTCT 298690 Query 169382 CGACCAACGACGGAGAGACCCGCGACTGCGAGAGTCTTCGCCGAGTCACCCTCGGTGACG 169441 | || || || | ||| | || ||||||| ||| || |||||||| ||||||| | Sbjct 298691 CTTCCTACTTCGACAATACCGGACACGGCGAGAGACTTGGCTGAGTCACCTTCGGTGAGG 298750 Query 169442 ATGAGCGTACATT--TTCCAGATTGTGCCGTACCCGCCTTGTTCGCATCATCCAATTTGG 169499 ||||| ||||| | || | |||| ||| || ||||| || || |||| |||| Sbjct 298751 ATGAGGGTACAGTCCTTTGCTTTCCTGCC--ACCAGCATTGTTGGCGTCCTCCAGCTTGG 298808 Query 169500 GAAT 169503 |||| Sbjct 298809 GAAT 298812 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583258627353520