Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20esculenta_20[genbank_20GCA_5F000819925.1_202015-01-16] 298 sequences; 20,196,985 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq79 336 2e-87 seq288 93.3 5e-14 >seq79 Length=472637 Score = 336 bits (372), Expect = 2e-87 Identities = 537/763 (70%), Gaps = 6/763 (1%) Strand=Plus/Minus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACG 53252 ||||||| |||||| | ||||||||||| | ||| | | | | | || || ||| Sbjct 421463 TCATGCGTGTCGCCGTCGGTATCCACGGCCAGGACATCGAGAGCGCCATCGAAACCTACA 421404 Query 53253 ACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGA 53312 || | ||| || |||| |||||| ||||| |||| || || |||||||| || || Sbjct 421403 ACCTCATGTCGCAGAAGTGCTTTACCCACGCTTCGCCCACTCTCTTCAACGCCGGGACAC 421344 Query 53313 ATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCA 53372 ||||| ||| | ||| || ||||| || | |||||||| ||||||||||| |||| Sbjct 421343 CACACCCCCAGCTCTCGTCGTGTTTCCTCGTCACCATGAAGGACGACTCGATCGATGGCA 421284 Query 53373 TCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCC 53432 ||||||| || |||||| |||||| ||||||||| | |||||||||||| || Sbjct 421283 TCTACGACACCCTCAAGACCTGTGCCATGATCTCCAAGACTGCCGGTGGTATCGGTCTCA 421224 Query 53433 ACTGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATG 53492 || | | |||| | | ||| | || || || ||||| ||| | | | Sbjct 421223 ACATCCACTGCATCCGAGGTACTGGCTCGTACATTGCCGGCACCAACGGTGTCAGCAACG 421164 Query 53493 GAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTG 53552 | |||||||| ||||| |||||||||||||||||||| || |||||| |||||||||| Sbjct 421163 GTATCGTGCCCATGCTTCGCGTCTTCAACAACACGGCTCGCTACGTCGACCAGGGTGGCA 421104 Query 53553 GGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGT 53612 ||||| || | || ||||||||| | ||||| |||||| | || | | |||| Sbjct 421103 ACAAGCGTCCCGGTGCCTTTGCCATCTACATTGAGCCTTGGCACTCGGATGTGTTCGAGT 421044 Query 53613 TTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTT-TACA 53671 | ||||| || || ||| || ||| | || ||| |||| ||| || || || ||| Sbjct 421043 TCCTCGACCTCCGCAAGAACCACGGTAAGGAGGAGGTGCGTGCCCGAGAGCTCTTCTAC- 420985 Query 53672 GCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTG 53731 || || ||| |||| |||||||||||| | | ||| ||| || ||| || |||| || Sbjct 420984 GCACTCTGGGTTCCCGACCTCTTCATGAAGAGGGTCGAGCAGAACGGAGACTGGTCGCTC 420925 Query 53732 ATGTGCCCGAACGAGTGCCCCGG-CCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAGAT 53790 |||||||| |||||||||||||| | | | | || ||| ||||| |||||| | | Sbjct 420924 ATGTGCCCCAACGAGTGCCCCGGTCTTGCCGACTG-CTATGGTGACGAGTTTGAGCGCCT 420866 Query 53791 GTATCGGACG-TACGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTAT 53849 || || || |||| | |||| || | |||| | |||||||| | || | | Sbjct 420865 CTA-CGAGCGCTACGAGGCCGAGGGTCGTTCCAAGCGCACCGTCAAGGCTCAGAAGCTCT 420807 Query 53850 GGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATT 53909 || | || |||||| || ||| ||||| || | |||| ||| |||||||||| Sbjct 420806 GGTACGCCATCCTCGAGTCGCAGACCGAGACTGGTAACCCGTTCATCCTCTACAAGGATG 420747 Query 53910 CGGTCAACGAGAAGAGCAACCAGAAGAACATCGGCGTCATCAA 53952 | | |||| |||||||||||||||||| ||||| |||||| Sbjct 420746 CTGCCAACCGCAAGAGCAACCAGAAGAACCTCGGCACCATCAA 420704 Score = 156 bits (172), Expect = 5e-33 Identities = 533/817 (65%), Gaps = 48/817 (6%) Strand=Plus/Minus Query 55138 GAACCTGAACCGGGTCATCGACAAGAATTACTACCCGACTGAAGCGGCGCGCAAGTCCAA 55197 |||||| ||| | ||||||||| || |||||||| || | || |||| ||||| Sbjct 420547 GAACCTCAACAAGATCATCGACATCAACTACTACCCCGTCGAGGAAGCTCGCAGATCCAA 420488 Query 55198 CCTCCGGCACCGGCCCATCGCCATCGGTGTACAGGGCTTGGCCGACATCTTCATGATGCT 55257 | | || ||||| ||||||| |||||||| ||||| | || ||| ||||||||| | Sbjct 420487 CATGCGCCACCGACCCATCGGTATCGGTGTTCAGGGTCTTGCTGACGCCTTCATGATCAT 420428 Query 55258 CGGATTGCCCTTCGACTCGGAACCTGCTCGAGAAATTAACCAGGACATCTTC-AGTCGCA 55316 || | | ||||| ||| ||||| | ||||| | | ||||| || | | Sbjct 420427 GGGCTACGCGTTCGAGTCGCCCGAGGCTCGCCGACTTAACGTGCAGATCTTTGAGACT-A 420369 Query 55317 TCTACTTTGCAGCGCTCGAGGAGTCGTGTCATCTGGCT-ATGAGCGAGGGGACCTACGAG 55375 | ||| || ||||||||| ||||| | |||||| | |||| | || || |||||| Sbjct 420368 TTTACCACGCTGCGCTCGAGCGATCGTGCGAGCTGGCTCAAGAGC-ACGGCACGTACGAG 420310 Query 55376 ACGTTCCGTGATTCGCCAGCTGACAAGGGACTTCTCCAGTTCGATCTATGGGGCAAGTCT 55435 |||| | | ||||| ||| |||| || |||| || | ||||| ||| Sbjct 420309 ACGTACGCCGGCTCGCCTGCTTCGCAGGGTGAGCTGCAGTATGACATGTGGGGT--GTC- 420253 Query 55436 GACCCCAT-------GTTTGACA------AGTTGAAGCATGACATTCACTTGTGGGGCCT 55482 ||||||| || ||| || | ||| | ||| | | || || Sbjct 420252 -ACCCCATCGGACCTGTGGGACTGGGCTGAGCTCAAGGCCAAGATTGCCAAGCACGGTCT 420194 Query 55483 ACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAA 55542 ||||||||| ||||| | || || ||||| ||||| |||||| |||||| | ||| Sbjct 420193 GCGCAACTCCTTGCTCCTCGCCCCCATGCCTACCGCCTCGACGAGTCAGATTCTCGGCTT 420134 Query 55543 CAACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGA 55602 ||||||| || ||||||||||| ||||||||||| |||||| || || || || Sbjct 420133 CAACGAGTGCTTTGAGCCGTACACATCCAACATCTACTCGCGCCGTGTGCTCGCCGGAGA 420074 Query 55603 GTTTGTCATGATCAACAA------GCACCTCGTCAAGGACCTGCAGAAGATCAACAAGTG 55656 ||| || | ||| || || || | | |||| | || ||| Sbjct 420073 GTTCCAGGTGGTTAACCCCTGGTTGCTCCGCGAGCTTGTCGAGCAG--GGTCT----GTG 420020 Query 55657 GAACCCGCAGATCAAGA--CGGAT-ATTGTGCGGAACGGGGGGTCCGTCCAGAATCTG-- 55711 |||| ||| |||| || || || | | |||| || || |||||||| || Sbjct 420019 GAACGACACGATGAAGAACCGCATCATCGCCC---ACGGTGGCTCGATCCAGAATGTGCC 419963 Query 55712 -GAGATTCCTCTGCGTCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAG 55770 | ||||| || ||||| || ||||| ||| ||||||||||| || ||| Sbjct 419962 CGGTATTCCCGACCGCATCAAGAAGCTTTACAAGACCGTGTGGGAGATCAGCCAAAAGGC 419903 Query 55771 TCTGATTGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACAT 55830 | || |||||| || || || || || | |||| |||||| ||||| || ||||| Sbjct 419902 CATCATCGACATGGCCGCCGACCGAGGCGCCTTCATCTGCCAGTCACAGTCGCTCAACAT 419843 Query 55831 CTTCATGGAGAATCCTTCAC---TGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAA 55887 | | | | ||| ||| |||||| || | || |||||||||||||| ||||| Sbjct 419842 CCACCTCTCGGCTCC--CACCTTTGGCCAGCTT-ACTTCAATGCACTTTTACGGCTGGAA 419786 Query 55888 GAAGGGACTCAAGACGGGTATGTACTATCTGCGGACC 55924 |||||| |||||||| |||| || || ||||| ||| Sbjct 419785 GAAGGGGCTCAAGACCGGTACCTATTACCTGCGTACC 419749 >seq288 Length=590259 Score = 93.3 bits (102), Expect = 5e-14 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 119084 TTGGCTAGCTTGGCACCGTATCCGTTCCGACCACCGGTCACGCGCTGCTCCTCGTCGTTG 119143 ||||| ||||| |||||||| ||||||| ||||||||| || ||| | ||||| | Sbjct 299669 TTGGCAAGCTTTGCACCGTAACCGTTCCTACCACCGGTGACCTTGGCCTCGTTGTCGTCG 299728 Query 119144 TAGTTGGAGCTGGTCAAAAGGTGCCCAAAGATGAGCTCGGGGAT 119187 ||||||||| ||| | |||||| ||||||||||| ||||| || Sbjct 299729 TAGTTGGAGGAGGTGAGAAGGTGACCAAAGATGAGTTCGGGAAT 299772 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547213961620400