Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20esculenta_20[genbank_20GCA_5F000819925.1_202015-01-16] 298 sequences; 20,196,985 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq1 114 8e-21 seq226 104 1e-17 >seq1 Length=1882320 Score = 114 bits (126), Expect = 8e-21 Identities = 162/225 (72%), Gaps = 2/225 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||| | ||||| ||| |||||| || ||||| || || ||||| || || Sbjct 79430 AGACGGAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGA 79371 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| || || || |||||||| || || | ||||| ||||| || || | ||||||| Sbjct 79370 CCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCAGGGGGGATTCCCTCC 79311 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| |||| || | || ||| | || ||||| |||||| || | ||| Sbjct 79310 TTGTCCTGGATC-TTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCCACCTCAAGGGT 79252 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGAT 34712 || || ||||| || | || |||||||| |||||||||||||| Sbjct 79251 GATGGTCTTACCCGTAAGGGTCTTCACAAAGATCTGCATGTTGAT 79207 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | |||||| | || | ||||||||| ||||| |||||||| || || ||| Sbjct 161271 CCGCCACGAAGACGGAGAACGAGGTGGAGAGTGGATTCCTTCTGAATGTTGTAGTCGGAA 161330 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || ||||||| || || || |||||||| || | ||||| ||||| || || Sbjct 161331 AGGGTGCGGCCGTCTTCCAGCTGCTTGCCGGCAAAGATGAGTCGCTGCTGGTCAGGGGGG 161390 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | |||||||||||| ||| || | || ||| | ||| ||||| ||| || Sbjct 161391 ATTCCCTCCTTGTC-CTGAATCTTGGCCTTGACGTTGTCAATGGTGTCCGAAGACTCGAC 161449 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||| | ||| || || ||||| || || || || ||||| || ||||| Sbjct 161450 TTCGAGGGTAATGGTCTTACCTGTCAAGGTCTTGACAAAGATTTGCAT 161497 >seq226 Length=271753 Score = 104 bits (114), Expect = 1e-17 Identities = 148/206 (72%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 34503 ATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTG 34562 |||||| ||| |||||| || ||||| ||||| || || ||||| | ||||| | || Sbjct 170137 ATGGAGGGTGGACTCCTTCTGGATGTTGTAATCCGAGAGGGTTCGGCCATCTTCCAACTG 170078 Query 34563 TTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTT 34622 ||||| ||||| || | ||||| ||||| || || | ||||||||||| |||| | Sbjct 170077 CTTACCAGCAAAGATAAGGCGCTGCTGGTCAGGGGGAATACCCTCCTTGTCCTGGATC-T 170019 Query 34623 TTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGG 34681 | | || ||| | ||| ||||| |||||| || | ||| || || ||||||| Sbjct 170018 TGGCCTTGACGTTGTCAATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTACCGG 169959 Query 34682 TTAACGTTTTCACAAAAATCTGCATG 34707 | | || || ||||| ||||||||| Sbjct 169958 TCAGAGTCTTGACAAAGATCTGCATG 169933 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314728456941434