Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20esculenta_20[genbank_20GCA_5F000819925.1_202015-01-16] 298 sequences; 20,196,985 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq226 122 8e-23 seq1 107 2e-18 seq247 84.2 2e-11 >seq226 Length=271753 Score = 122 bits (134), Expect = 8e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || || || |||||| | || || || || || || | ||| Sbjct 170846 ATGCAGATCTTTGTCAAGACGCTCACAGGCAAGACAATCACGCTCGAGGTTGAGTCTTCC 170905 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| ||||||| | ||||| || ||||| ||||| || || || || || || || Sbjct 170906 GACACGATTGACAATGTCAAGGCCAAGATTCAGGACAAGGAGGGTATTCCTCCTGACCAG 170965 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||| | || | ||| || || || | || ||| | ||| |||| ||||||||| Sbjct 170966 CAACGTCTCATTTTCGCAGGAAAGCAGCTCGAGGACGGACGGACGCTTTCGGATTACAAC 171025 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||| || | ||| | |||||||| |||| ||||| || Sbjct 171026 ATCCAGAAGGAGTCTACGCTCCATCTCGTTTTGCGACTGCGCGGTGGTAT 171075 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| || ||||||||||| ||| | || || || || ||||| | || Sbjct 169933 CATGCAGATCTTTGTCAAGACTCTGACCGGTAAGACCATCACCCTCGAGGTGGAGTCTTC 169992 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||| | ||||| | ||||| || || || ||||| || || || || || || || Sbjct 169993 CGACACCATTGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGTATTCCCCCTGACCA 170052 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||| | || | || || || || |||||||| | ||| | || |||||||| Sbjct 170053 GCAGCGCCTTATCTTTGCTGGTAAGCAGTTGGAAGATGGCCGAACCCTCTCGGATTACAA 170112 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || |||||||| ||| | ||| | || | || | || ||||| || Sbjct 170113 CATCCAGAAGGAGTCCACCCTCCATCTCGTCCTTCGCCTCCGTGGTGGTAT 170163 >seq1 Length=1882320 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || || |||| || ||| | ||||| || ||||| || | || Sbjct 161497 ATGCAAATCTTTGTCAAGACCTTGACAGGTAAGACCATTACCCTCGAAGTCGAGTCTTCG 161438 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | ||||| || ||||| ||||| || || || || || || || Sbjct 161437 GACACCATTGACAACGTCAAGGCCAAGATTCAGGACAAGGAGGGAATCCCCCCTGACCAG 161378 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | |||||||| || |||||||| | ||| ||||||| |||||| Sbjct 161377 CAGCGACTCATCTTTGCCGGCAAGCAGCTGGAAGACGGCCGCACCCTTTCCGACTACAAC 161318 Query 27168 ATTCAAAAGGAGTCGAC 27184 ||||| ||||| || || Sbjct 161317 ATTCAGAAGGAATCCAC 161301 >seq247 Length=126104 Score = 84.2 bits (92), Expect = 2e-11 Identities = 142/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 27012 ACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAA 27071 || || ||| | ||||| ||||| ||||| | || ||| | || || | || || Sbjct 70992 ACAGGTAAGACCATTACCCTTGAGGTGGAGTCCTCGGACACCATCGACAATGTTAAGGCC 71051 Query 27072 AAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAA 27131 || ||||| || || || || || || ||||| || ||||| | || | |||||| || Sbjct 71052 AAGATTCAGGATAAGGAGGGTATTCCCCCCGACCAGCAGCGCCTGATCTTCGCCGGTAAG 71111 Query 27132 CAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACAT 27191 || | || ||| | ||| | || || |||||||| || |||||||||||| | || Sbjct 71112 CAGCTCGAGGACGGCCGCACCCTCTCGGACTACAACATCCAGAAGGAGTCGACCCTCCAC 71171 Query 27192 TTGGTTTTGCGTTTGCGGGGTGGCAT 27217 | || | ||| |||| ||||| || Sbjct 71172 CTTGTCCTCCGTCTGCGTGGTGGAAT 71197 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434916779928960