Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20esculenta_20[genbank_20GCA_5F000819925.1_202015-01-16] 298 sequences; 20,196,985 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq226 188 2e-42 seq1 185 2e-41 seq247 138 3e-27 >seq226 Length=271753 Score = 188 bits (208), Expect = 2e-42 Identities = 169/212 (80%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| || || || |||||||| || |||||||| ||||||| ||||| | |||||| Sbjct 170145 AGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAATCCGAGAGGGTTCGGCCATCT 170086 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| |||||| || || ||||||||||| || |||||||| |||| || ||||||||| Sbjct 170085 TCCAACTGCTTACCAGCAAAGATAAGGCGCTGCTGGTCAGGGGGAATACCCTCCTTGTCC 170026 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| || |||||||| || || |||||||| ||||| ||| Sbjct 170025 TGGATCTTGGCCTTGACGTTGTCAATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTC 169966 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || |||||||| ||||| | |||||| Sbjct 169965 TTACCGGTCAGAGTCTTGACAAAGATCTGCAT 169934 Score = 176 bits (194), Expect = 1e-38 Identities = 166/212 (78%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || |||||||| | |||||||| || || |||||||| |||| || || | ||||| Sbjct 170829 AGCACAAGGTGCAAGGTGGACTCCTTCTGAATGTTATAGTCCGAGAGCGTGCGGCCATCC 170770 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||| ||||| ||||| || ||||| |||||||| |||| |||||||||||| Sbjct 170769 TCGAGCTGCTTTCCTGCAAAGATGAGACGTTGCTGGTCAGGGGGAATACCTTCCTTGTCC 170710 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| || ||||| || |||||||| || || |||||||| ||||| ||| Sbjct 170709 TGAATCTTGGCCTTGACGTTGTCAATGGTGTCTGAAGACTCGACCTCGAGCGTGATTGTC 170650 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| ||||| ||||| | |||||| Sbjct 170649 TTGCCTGTGAGCGTCTTGACAAAGATCTGCAT 170618 Score = 174 bits (192), Expect = 4e-38 Identities = 164/209 (78%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 210906 ACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCC 210965 || || || || || ||||| || |||||||| ||||||| ||| |||| ||| || || Sbjct 171054 ACGAGATGGAGCGTAGACTCCTTCTGGATGTTGTAATCCGAAAGCGTCCGTCCGTCCTCG 170995 Query 210966 AGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGG 211025 |||||||| |||||||| || || ||||| ||||||||||||| || ||||||||||| Sbjct 170994 AGCTGCTTTCCTGCGAAAATGAGACGTTGCTGGTCAGGAGGAATACCCTCCTTGTCCTGA 170935 Query 211026 ATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTT 211085 ||||| || || || || || ||||| || ||||||||||| ||||| ||||| Sbjct 170934 ATCTTGGCCTTGACATTGTCAATCGTGTCGGAAGACTCAACCTCGAGCGTGATTGTCTTG 170875 Query 211086 CCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| ||||| ||||| | |||||| Sbjct 170874 CCTGTGAGCGTCTTGACAAAGATCTGCAT 170846 Score = 158 bits (174), Expect = 3e-33 Identities = 162/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || |||||||| | |||||||| || || |||||||| |||| || || | ||||| Sbjct 170373 AGCACAAGGTGCAAGGTGGACTCCTTCTGAATGTTATAGTCCGAGAGCGTGCGGCCATCC 170314 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||| ||||| ||||| || ||||| |||||||| |||| |||||||||||| Sbjct 170313 TCGAGCTGCTTTCCTGCAAAGATGAGACGTTGCTGGTCAGGGGGAATACCTTCCTTGTCC 170254 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| || ||||| || |||||||| || || ||||| | |||||| ||| Sbjct 170253 TGAATCTTGGCCTTGACGTTGTCAATGGTGTCTGAAGACTCGACCTCCAAAGTGATGGTC 170194 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || | ||||| ||||| | ||||| Sbjct 170193 TTGCCAGTCAAGGTCTTGACAAAGATTTGCAT 170162 Score = 143 bits (158), Expect = 6e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || |||||||| | ||| ||| || || ||||| || |||| || || | ||||| Sbjct 171285 AGCACAAGGTGCAAGGTGCTCTCCTTCTGAATGTTGTAGTCCGAGAGCGTGCGGCCATCC 171226 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||| ||||| ||||| || ||||| |||||||| |||| |||||||||||| Sbjct 171225 TCGAGCTGCTTTCCTGCAAAGATGAGACGTTGCTGGTCAGGGGGAATACCTTCCTTGTCC 171166 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| || || || || |||||||| || || ||||| | |||||| ||| Sbjct 171165 TGAATCTTGGCCTTGACATTGTCAATGGTGTCTGAAGACTCGACCTCCAAAGTGATGGTC 171106 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || | ||||| ||||| | |||||| Sbjct 171105 TTGCCAGTCAAGGTCTTGACAAAGATCTGCAT 171074 Score = 138 bits (152), Expect = 3e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 210906 ACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCC 210965 || || || || || ||||| || ||||| || || || | ||||| | ||||| || Sbjct 170598 ACGAGATGGAGCGTAGACTCCTTCTGGATATTGTAGTCAGACAGGGTGCGGCCATCCTCG 170539 Query 210966 AGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGG 211025 || ||||| || ||||| || || || || ||||||||||||| || ||||| || ||| Sbjct 170538 AGTTGCTTTCCGGCGAAAATGAGACGCTGCTGGTCAGGAGGAATACCCTCCTTATCTTGG 170479 Query 211026 ATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTT 211085 ||||| ||| || || || || || || ||| || |||||||| ||||||||||| Sbjct 170478 ATCTTGGCTTTGACATTGTCAATAGTATCCGAGGACTCGACCTCGAGTGTGATCGTCTTA 170419 Query 211086 CCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || ||||| ||||| | |||||| Sbjct 170418 CCAGTAAGGGTCTTGACAAAGATCTGCAT 170390 >seq1 Length=1882320 Score = 185 bits (204), Expect = 2e-41 Identities = 170/215 (79%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || |||||||| || |||||||| || |||||||| || |||| |||||| | || || Sbjct 79424 AGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGACCGTCC 79365 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||| || ||||||||||| || || |||||||| || | ||| ||||||||| Sbjct 79364 TCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCAGGGGGGATTCCCTCCTTGTCC 79305 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| ||||||||||| || || ||||| || ||||| ||| Sbjct 79304 TGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCCACCTCAAGGGTGATGGTC 79245 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || ||||| || ||||| ||||| | |||||| || Sbjct 79244 TTACCCGTAAGGGTCTTCACAAAGATCTGCATGTT 79210 Score = 152 bits (168), Expect = 1e-31 Identities = 167/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || || ||||| |||||||| || || || ||||| || || | |||||| Sbjct 161276 ACGAAGACGGAGAACGAGGTGGAGAGTGGATTCCTTCTGAATGTTGTAGTCGGAAAGGGT 161335 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | || ||||||||||||||||| || ||||| || || || |||||||| || | ||| Sbjct 161336 GCGGCCGTCTTCCAGCTGCTTGCCGGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATTCC 161395 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||||| ||||| || ||||| || |||||||| || || || ||||| Sbjct 161396 CTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCAATGGTGTCCGAAGACTCGACTTCGAG 161455 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| || || | ||||| ||||| | ||||| Sbjct 161456 GGTAATGGTCTTACCTGTCAAGGTCTTGACAAAGATTTGCAT 161497 Score = 123 bits (136), Expect = 6e-23 Identities = 112/141 (79%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 210974 GCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTG 211033 ||| || ||||| || || || |||||||| || | ||| ||||||||||| ||||| Sbjct 161585 GCCGGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATTCCCTCCTTGTCCTGAATCTTGGC 161644 Query 211034 TTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAG 211093 || || || ||||||||||| ||| || |||||||||||||| ||||| || ||||| Sbjct 161645 CTTGACATTGTCGATGGTGTCCGAGGACTCGACCTCGAGAGTGATGGTCTTGCCGGTGAG 161704 Query 211094 AGTCTTTACAAACACCTGCAT 211114 ||||||||||| | |||||| Sbjct 161705 GGTCTTTACAAAGATCTGCAT 161725 >seq247 Length=126104 Score = 138 bits (152), Expect = 3e-27 Identities = 144/189 (76%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||||||||| || || ||||| || |||||||| || |||| ||||| | || || Sbjct 71179 AGGACAAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCC 71120 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||| || |||||||| ||||| || ||||| || |||| || ||||| ||| Sbjct 71119 TCGAGCTGCTTACCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGAATACCCTCCTTATCC 71060 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| || || || ||||||||||| ||| || ||||| || || || ||| Sbjct 71059 TGAATCTTGGCCTTAACATTGTCGATGGTGTCCGAGGACTCCACCTCAAGGGTAATGGTC 71000 Query 211083 TTTCCCGTG 211091 || || ||| Sbjct 70999 TTACCTGTG 70991 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159147574212770