Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20esculenta_20[genbank_20GCA_5F000819925.1_202015-01-16] 298 sequences; 20,196,985 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq226 87.8 2e-12 seq1 82.4 7e-11 >seq226 Length=271753 Score = 87.8 bits (96), Expect = 2e-12 Identities = 144/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 39081 ATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTG 39140 ||| || ||| ||| || || || || ||||| | || ||||| | || || | ||| Sbjct 170137 ATGGAGGGTGGACTCCTTCTGGATGTTGTAATCCGAGAGGGTTCGGCCATCTTCCAACTG 170078 Query 39141 TTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTT 39200 || || ||||| ||||| ||||||||||| | ||| | | ||| |||||| ||| || Sbjct 170077 CTTACCAGCAAAGATAAGGCGCTGCTGGTCAGGGGGAATACCCTCCTTGTCCTGGATCTT 170018 Query 39201 CTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCG 39259 |||| ||| | | | || ||| |||||||| || | ||||| | || || | Sbjct 170017 GGCCTTGA-CGTTGTCAATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTACCGG 169959 Query 39260 TCAGCGTTTTAACAAAGATTTGCAT 39284 |||| || || |||||||| ||||| Sbjct 169958 TCAGAGTCTTGACAAAGATCTGCAT 169934 >seq1 Length=1882320 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/207 (70%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || || ||| ||| || || || || || || | ||| || || |||| || ||||| Sbjct 79415 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGACCGTCCTCGAGCTGC 79356 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201 || || || || ||||| ||||||||||| | ||| | | ||| |||||| ||| || Sbjct 79355 TTACCGGCGAAGATAAGTCGCTGCTGGTCAGGGGGGATTCCCTCCTTGTCCTGGATCTTG 79296 Query 39202 TGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGT 39260 |||| ||| | | | || || |||||||| || | ||||| | || ||||| Sbjct 79295 GCCTTGA-CGTTGTCGATGGTGTCCGAAGACTCCACCTCAAGGGTGATGGTCTTACCCGT 79237 Query 39261 CAGCGTTTTAACAAAGATTTGCATCTT 39287 || || || |||||||| ||||| || Sbjct 79236 AAGGGTCTTCACAAAGATCTGCATGTT 79210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429544039944074