Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20esculenta_20[genbank_20GCA_5F000819925.1_202015-01-16] 298 sequences; 20,196,985 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq226 91.5 1e-13 seq1 89.7 3e-13 >seq226 Length=271753 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/215 (71%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || || ||||| || || || ||||| ||||| ||||| || | Sbjct 170846 ATGCAGATCTTTGTCAAGACGCTCACAGGCAAGACAATCACGCTCGAGGTTGAGTCTTCC 170905 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || | || | || ||||| || ||| | || || || || Sbjct 170906 GACACGATTGACAATGTCAAGGCCAAGA-TTCAGGACAAGGAGGGTATTCCTCCTGACCA 170964 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCAC--TTTAGGCGATTAC 23787 || ||| | || || || || || || || || |||| ||| || ||| || ||||| Sbjct 170965 GCAACGTCTCATTTTCGCAGGAAAGCAGCTCGAGGACGGACGGACGCTTTCGG--ATTAC 171022 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTT 23822 ||||| || || ||||| || | ||| | ||||| Sbjct 171023 AACATCCAGAAGGAGTCTACGCTCCATCTCGTTTT 171057 >seq1 Length=1882320 Score = 89.7 bits (98), Expect = 3e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || || ||| | || || || || || || |||||||| || || || Sbjct 161497 ATGCAAATCTTTGTCAAGACCTTGACAGGTAAGACCATTACCCTCGAAGTCGAGTCTTCG 161438 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | | || || ||| ||||| || || | || || || || Sbjct 161437 GACACCATTGACAACGTCAAGGCCAAGATTCAGGACAAGGAGGGAATCCCCCCTGACCAG 161378 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | || ||||||||||| || |||||||||| ||||| | ||| |||||| Sbjct 161377 CAGCGACTCATCTTTGCCGGCAAGCAGCTGGAAGACGGCCGCACCCTTTCCGACTACAAC 161318 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || || ||||| Sbjct 161317 ATTCAGAAGGAATCCAC 161301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338008372391384