Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20esculenta_20[genbank_20GCA_5F000819925.1_202015-01-16] 298 sequences; 20,196,985 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq236 102 1e-16 >seq236 Length=132806 Score = 102 bits (112), Expect = 1e-16 Identities = 147/207 (71%), Gaps = 3/207 (1%) Strand=Plus/Plus Query 48182 TTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGC 48241 |||||| || || |||||||||||||| || ||||| || |||||||| || || | || Sbjct 3665 TTCGTTGGAGAAGGTGAGACCGGGCATAAGACCACGCTTCTTGAGCCAGAAGATGGAGGC 3724 Query 48242 GAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTA 48301 ||| || ||||| ||||| ||||| || ||||| ||||| || || | ||| || | Sbjct 3725 GAAGGAGCCAGAGAAGAAGATGCCCTCAACGGCGGCAAAGGCAACGAGACGCTCGGCGAA 3784 Query 48302 ACTGGC---TTCGTTGTGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGG 48358 | || | || | ||||| || | ||||| || ||||||| ||| || || Sbjct 3785 GGTAGCGCGTCGGTCGCTGATCCAGCGAAGAGCCCAGTCGGCCTTCTCCTTGACGACGGG 3844 Query 48359 CATTGTTTCTATAGCATTAAAGAGAAA 48385 ||||| || | ||| | |||||| || Sbjct 3845 GATTGTCTCGACAGCGTCAAAGAGGAA 3871 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694666212358720