Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20esculenta_20[genbank_20GCA_5F000819925.1_202015-01-16] 298 sequences; 20,196,985 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq226 187 5e-42 seq1 174 3e-38 seq247 132 1e-25 seq230 93.3 9e-14 seq35 89.7 1e-12 >seq226 Length=271753 Score = 187 bits (206), Expect = 5e-42 Identities = 178/228 (78%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| ||||| || | || ||||| | ||| || || ||||| |||||||||| Sbjct 170617 ACCACCGCGCAGTCGCAAAACGAGATGGAGCGTAGACTCCTTCTGGATATTGTAGTCAGA 170558 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||||||||| ||||| || ||||| || || | ||| || |||||| || Sbjct 170557 CAGGGTGCGGCCATCCTCGAGTTGCTTTCCGGCGAAAATGAGACGCTGCTGGTCAGGAGG 170498 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||||||||| ||||||||||| ||||| || | || ||||| ||||| | ||||| Sbjct 170497 AATACCCTCCTTATCTTGGATCTTGGCTTTGACATTGTCAATAGTATCCGAGGACTCGAC 170438 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| |||||||||||||| || | ||||| || || |||||||| Sbjct 170437 CTCGAGTGTGATCGTCTTACCAGTAAGGGTCTTGACAAAGATCTGCAT 170390 Score = 181 bits (200), Expect = 2e-40 Identities = 177/228 (78%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| ||||| || || || || || || || ||||| || || || ||||||||||| | Sbjct 171301 ACCGCCACGGAGACGGAGCACAAGGTGCAAGGTGCTCTCCTTCTGAATGTTGTAGTCCGA 171242 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||||||||||||||||| || || || || |||||||| | |||||| |||||| || Sbjct 171241 GAGCGTGCGGCCATCCTCGAGCTGCTTTCCTGCAAAGATGAGACGTTGCTGGTCAGGGGG 171182 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||| |||||||| || ||||| || || || | || || ||||| |||| ||||| Sbjct 171181 AATACCTTCCTTGTCCTGAATCTTGGCCTTGACATTGTCAATGGTGTCTGAAGACTCGAC 171122 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | |||||| ||||| || ||||| ||||| || || |||||||| Sbjct 171121 CTCCAAAGTGATGGTCTTGCCAGTCAAGGTCTTGACAAAGATCTGCAT 171074 Score = 178 bits (196), Expect = 3e-39 Identities = 176/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| |||||||| || ||||| | ||| || || ||||||||||| || | Sbjct 170161 ACCACCACGGAGGCGAAGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAATCCGA 170102 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || |||||||| || | || || || |||||||| | || || |||||| || Sbjct 170101 GAGGGTTCGGCCATCTTCCAACTGCTTACCAGCAAAGATAAGGCGCTGCTGGTCAGGGGG 170042 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||||||||||||||| |||||||| || || ||| | || || ||||| |||| || || Sbjct 170041 AATACCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATGGTGTCGGAAGACTCCAC 169982 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| ||||| |||||||| |||| |||||| || || |||||||| Sbjct 169981 CTCGAGGGTGATGGTCTTACCGGTCAGAGTCTTGACAAAGATCTGCAT 169934 Score = 178 bits (196), Expect = 3e-39 Identities = 176/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| || |||||||| || || || || ||| || || || ||||| ||||| | Sbjct 170389 ACCACCGCGGAGGCGAAGCACAAGGTGCAAGGTGGACTCCTTCTGAATGTTATAGTCCGA 170330 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||||||||||||||||| || || || || |||||||| | |||||| |||||| || Sbjct 170329 GAGCGTGCGGCCATCCTCGAGCTGCTTTCCTGCAAAGATGAGACGTTGCTGGTCAGGGGG 170270 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||| |||||||| || ||||| || || ||| | || || ||||| |||| ||||| Sbjct 170269 AATACCTTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCAATGGTGTCTGAAGACTCGAC 170210 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | |||||| ||||| || ||||| ||||| || || || ||||| Sbjct 170209 CTCCAAAGTGATGGTCTTGCCAGTCAAGGTCTTGACAAAGATTTGCAT 170162 Score = 178 bits (196), Expect = 3e-39 Identities = 176/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| || |||||||| || || || || ||| || || || ||||| ||||| | Sbjct 170845 ACCACCGCGGAGGCGAAGCACAAGGTGCAAGGTGGACTCCTTCTGAATGTTATAGTCCGA 170786 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||||||||||||||||| || || || || |||||||| | |||||| |||||| || Sbjct 170785 GAGCGTGCGGCCATCCTCGAGCTGCTTTCCTGCAAAGATGAGACGTTGCTGGTCAGGGGG 170726 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||| |||||||| || ||||| || || ||| | || || ||||| |||| ||||| Sbjct 170725 AATACCTTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCAATGGTGTCTGAAGACTCGAC 170666 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| ||||| ||||| || || | ||||| || || |||||||| Sbjct 170665 CTCGAGCGTGATTGTCTTGCCTGTGAGCGTCTTGACAAAGATCTGCAT 170618 Score = 150 bits (166), Expect = 4e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| ||||| || | || ||||| | ||| || || ||||||||||| || | Sbjct 171073 ACCACCGCGCAGTCGCAAAACGAGATGGAGCGTAGACTCCTTCTGGATGTTGTAATCCGA 171014 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 |||||| || || ||||| || || || || || || || | |||||| |||||| || Sbjct 171013 AAGCGTCCGTCCGTCCTCGAGCTGCTTTCCTGCGAAAATGAGACGTTGCTGGTCAGGAGG 170954 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||||||||||||||| || ||||| || || || | || || ||||| |||| || || Sbjct 170953 AATACCCTCCTTGTCCTGAATCTTGGCCTTGACATTGTCAATCGTGTCGGAAGACTCAAC 170894 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| ||||| ||||| || || | ||||| || || |||||||| Sbjct 170893 CTCGAGCGTGATTGTCTTGCCTGTGAGCGTCTTGACAAAGATCTGCAT 170846 >seq1 Length=1882320 Score = 174 bits (192), Expect = 3e-38 Identities = 179/234 (76%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||||||||| || || || || || | ||| || || |||||||||||||| | Sbjct 79440 ACCACCACGCAGACGGAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGA 79381 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| ||||| || ||||| || || || ||||| ||||| | || || |||||| || Sbjct 79380 AAGGGTGCGACCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCAGGGGG 79321 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| |||||||| || || ||| | ||||| |||||||||| || || Sbjct 79320 GATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCCAC 79261 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTTCAT 283105 || || ||||| ||||||||||| | ||||| || || |||||||| || || Sbjct 79260 CTCAAGGGTGATGGTCTTACCCGTAAGGGTCTTCACAAAGATCTGCATGTTGAT 79207 Score = 168 bits (186), Expect = 1e-36 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| ||||| || || || || || || | ||| ||| || || ||||||||||| | Sbjct 161270 ACCGCCACGAAGACGGAGAACGAGGTGGAGAGTGGATTCCTTCTGAATGTTGTAGTCGGA 161329 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| |||||||| || || || || || ||||||||||| | || || |||||| || Sbjct 161330 AAGGGTGCGGCCGTCTTCCAGCTGCTTGCCGGCAAAGATGAGTCGCTGCTGGTCAGGGGG 161389 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| || ||||| || || ||| | || || |||||||||| ||||| Sbjct 161390 GATTCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCAATGGTGTCCGAAGACTCGAC 161449 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 |||||| || || |||||||| ||||| ||||| || || || ||||| Sbjct 161450 TTCGAGGGTAATGGTCTTACCTGTCAAGGTCTTGACAAAGATTTGCAT 161497 Score = 109 bits (120), Expect = 1e-18 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 ||||||||||| | || || |||||| || || ||||||||||| || ||||| || Sbjct 161586 CCGGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATTCCCTCCTTGTCCTGAATCTTGGCC 161645 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 || || | ||||| |||||||| | ||||| ||||||||||| ||||| || || | Sbjct 161646 TTGACATTGTCGATGGTGTCCGAGGACTCGACCTCGAGAGTGATGGTCTTGCCGGTGAGG 161705 Query 283080 GTCTTAACGAATATCTGCAT 283099 ||||| || || |||||||| Sbjct 161706 GTCTTTACAAAGATCTGCAT 161725 >seq247 Length=126104 Score = 132 bits (146), Expect = 1e-25 Identities = 151/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||||||||| || || || || || | || || || |||||||||||||| | Sbjct 71194 CCACCACGCAGACGGAGGACAAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAG 71135 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || |||||||| ||||| || || || ||||| ||||||| || || ||||| ||| Sbjct 71134 AGGGTGCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGA 71075 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 ||||||||||| || || ||||| || || || | ||||| |||||||| | || || Sbjct 71074 ATACCCTCCTTATCCTGAATCTTGGCCTTAACATTGTCGATGGTGTCCGAGGACTCCACC 71015 Query 283053 TCGAGAGTGATCGTCTTACCCGT 283075 || || || || |||||||| || Sbjct 71014 TCAAGGGTAATGGTCTTACCTGT 70992 >seq230 Length=150239 Score = 93.3 bits (102), Expect = 9e-14 Identities = 68/79 (86%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 167288 GACGCCATAGCTCAGTTGGTTAGAGCGTTCGACTGTTAATCGAGAGGTCGTCGGTTCGAA 167347 ||| |||||||||||||||||||||||| ||||||||| ||||||| |||||||| Sbjct 132424 GACTCCATAGCTCAGTTGGTTAGAGCGTAGCACTGTTAATGCTGAGGTCGGCGGTTCGAG 132483 Query 167348 CCCGACTGGTGTCGTTTGC 167366 |||| |||| ||||||||| Sbjct 132484 CCCGCCTGGGGTCGTTTGC 132502 Score = 87.8 bits (96), Expect = 4e-12 Identities = 70/83 (84%), Gaps = 1/83 (1%) Strand=Plus/Plus Query 167113 CGCAG-ACGCCATAGCTCAGTTGGTTAGAGCGTTCGACTGTTAATCGAGAGGTCGTCGGT 167171 ||||| || |||||||||||||||||||||||| ||||||||| ||||||| |||| Sbjct 132419 CGCAGGACTCCATAGCTCAGTTGGTTAGAGCGTAGCACTGTTAATGCTGAGGTCGGCGGT 132478 Query 167172 TCGAACCCGACTGGTGTCGTATG 167194 |||| |||| |||| ||||| || Sbjct 132479 TCGAGCCCGCCTGGGGTCGTTTG 132501 >seq35 Length=362406 Score = 89.7 bits (98), Expect = 1e-12 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 167285 ACAGACGCCATAGCTCAGTTGGTTAGAGCGTTCGACTGTTAATCGAGAGGTCGTCGGTTC 167344 |||||| |||||||||||||||||||||||| ||||||||| ||||||| |||||| Sbjct 258913 ACAGACTCCATAGCTCAGTTGGTTAGAGCGTAGCACTGTTAATGCTGAGGTCGGCGGTTC 258972 Query 167345 GAACCCGACTGGTGTCG 167361 || |||| |||| |||| Sbjct 258973 GAGCCCGCCTGGGGTCG 258989 Score = 89.7 bits (98), Expect = 1e-12 Identities = 67/79 (85%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 167288 GACGCCATAGCTCAGTTGGTTAGAGCGTTCGACTGTTAATCGAGAGGTCGTCGGTTCGAA 167347 ||| |||||||||||||||||||||||| ||||||||| ||||||| |||||||| Sbjct 294306 GACTCCATAGCTCAGTTGGTTAGAGCGTAGCACTGTTAATGCTGAGGTCGGCGGTTCGAG 294365 Query 167348 CCCGACTGGTGTCGTTTGC 167366 |||| |||| |||| |||| Sbjct 294366 CCCGCCTGGGGTCGGTTGC 294384 Score = 87.8 bits (96), Expect = 4e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 167115 CAGACGCCATAGCTCAGTTGGTTAGAGCGTTCGACTGTTAATCGAGAGGTCGTCGGTTCG 167174 ||||| |||||||||||||||||||||||| ||||||||| ||||||| ||||||| Sbjct 258914 CAGACTCCATAGCTCAGTTGGTTAGAGCGTAGCACTGTTAATGCTGAGGTCGGCGGTTCG 258973 Query 167175 AACCCGACTGGTGTCG 167190 | |||| |||| |||| Sbjct 258974 AGCCCGCCTGGGGTCG 258989 Score = 84.2 bits (92), Expect = 5e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 167117 GACGCCATAGCTCAGTTGGTTAGAGCGTTCGACTGTTAATCGAGAGGTCGTCGGTTCGAA 167176 ||| |||||||||||||||||||||||| ||||||||| ||||||| |||||||| Sbjct 294306 GACTCCATAGCTCAGTTGGTTAGAGCGTAGCACTGTTAATGCTGAGGTCGGCGGTTCGAG 294365 Query 167177 CCCGACTGGTGTCG 167190 |||| |||| |||| Sbjct 294366 CCCGCCTGGGGTCG 294379 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046735203418892