Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20esculenta_20[genbank_20GCA_5F000819925.1_202015-01-16] 298 sequences; 20,196,985 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq226 163 7e-35 seq1 159 8e-34 seq247 123 6e-23 >seq226 Length=271753 Score = 163 bits (180), Expect = 7e-35 Identities = 165/215 (77%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || || |||||||| || || ||||| |||||||| || || ||| Sbjct 170849 CAGATCTTTGTCAAGACGCTCACAGGCAAGACAATCACGCTCGAGGTTGAGTCTTCCGAC 170908 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || ||||| |||||||||||||| || || || ||||| ||||||||| Sbjct 170909 ACGATTGACAATGTCAAGGCCAAGATTCAGGACAAGGAGGGTATTCCTCCTGACCAGCAA 170968 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || ||||| ||||| |||||||| || ||| |||| ||| | ||||| ||| || Sbjct 170969 CGTCTCATTTTCGCAGGAAAGCAGCTCGAGGACGGACGGACGCTTTCGGATTACAACATC 171028 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 || || || || || || ||||| |||||| |||| Sbjct 171029 CAGAAGGAGTCTACGCTCCATCTCGTTTTGCGACT 171063 Score = 150 bits (166), Expect = 4e-31 Identities = 157/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || || |||||||| || || ||||| |||||||| || |||||| Sbjct 170621 CAGATCTTTGTCAAGACGCTCACAGGCAAGACAATCACGCTCGAGGTCGAGTCTTCAGAC 170680 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || |||||||| |||||||||||||| ||||| || || || ||||||||| Sbjct 170681 ACCATTGACAACGTCAAGGCCAAGATTCAGGACAAGGAAGGTATTCCCCCTGACCAGCAA 170740 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || ||||| |||||||| ||||| | || || | || |||||| | Sbjct 170741 CGTCTCATCTTTGCAGGAAAGCAGCTCGAGGATGGCCGCACGCTCTCGGACTATAACATT 170800 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || |||| ||||| Sbjct 170801 CAGAAGGAGTCCACCTTGCACCTTGT 170826 Score = 138 bits (152), Expect = 3e-27 Identities = 154/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || ||||| || || || || ||||||||||||||||| || ||| Sbjct 169937 CAGATCTTTGTCAAGACTCTGACCGGTAAGACCATCACCCTCGAGGTGGAGTCTTCCGAC 169996 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || |||||||| ||||| |||||||| || || || || || |||||||| Sbjct 169997 ACCATTGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGTATTCCCCCTGACCAGCAG 170056 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || |||||||| || || || ||| | |||||||| | || || | ||||| ||| || Sbjct 170057 CGCCTTATCTTTGCTGGTAAGCAGTTGGAAGATGGCCGAACCCTCTCGGATTACAACATC 170116 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || ||||| || Sbjct 170117 CAGAAGGAGTCCACCCTCCATCTCGT 170142 Score = 132 bits (146), Expect = 1e-25 Identities = 153/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || || || | || || || || ||||| | ||||| || |||||| Sbjct 170165 CAAATCTTTGTCAAGACCTTGACTGGCAAGACCATCACTTTGGAGGTCGAGTCTTCAGAC 170224 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || |||||||| |||||||||||||| ||||| || || || ||||||||| Sbjct 170225 ACCATTGACAACGTCAAGGCCAAGATTCAGGACAAGGAAGGTATTCCCCCTGACCAGCAA 170284 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || ||||| |||||||| ||||| | || || | || |||||| | Sbjct 170285 CGTCTCATCTTTGCAGGAAAGCAGCTCGAGGATGGCCGCACGCTCTCGGACTATAACATT 170344 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || |||| ||||| Sbjct 170345 CAGAAGGAGTCCACCTTGCACCTTGT 170370 Score = 127 bits (140), Expect = 5e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || || || || || || |||||||| |||||||| || ||| || Sbjct 170393 CAGATCTTTGTCAAGACCCTTACTGGTAAGACGATCACACTCGAGGTCGAGTCCTCGGAT 170452 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || |||||| ||||| || || || || || || ||||| |||||||| Sbjct 170453 ACTATTGACAATGTCAAAGCCAAGATCCAAGATAAGGAGGGTATTCCTCCTGACCAGCAG 170512 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || ||||||||||| || ||||| ||||| | || || | || || || || Sbjct 170513 CGTCTCATTTTCGCCGGAAAGCAACTCGAGGATGGCCGCACCCTGTCTGACTACAATATC 170572 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 || || || || || || ||||| |||||| |||| Sbjct 170573 CAGAAGGAGTCTACGCTCCATCTCGTTTTGCGACT 170607 Score = 111 bits (122), Expect = 4e-19 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || || | || || || || ||||| | ||||| || |||||| Sbjct 171077 CAGATCTTTGTCAAGACCTTGACTGGCAAGACCATCACTTTGGAGGTCGAGTCTTCAGAC 171136 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || ||||| |||||||||||||| ||||| || || || ||||||||| Sbjct 171137 ACCATTGACAATGTCAAGGCCAAGATTCAGGACAAGGAAGGTATTCCCCCTGACCAGCAA 171196 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || ||||| |||||||| ||||| | || || | || || ||| | Sbjct 171197 CGTCTCATCTTTGCAGGAAAGCAGCTCGAGGATGGCCGCACGCTCTCGGACTACAACATT 171256 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || |||| ||||| Sbjct 171257 CAGAAGGAGAGCACCTTGCACCTTGT 171282 >seq1 Length=1882320 Score = 159 bits (176), Expect = 8e-34 Identities = 159/206 (77%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| || || || || || || |||||||| |||||||| || ||| Sbjct 79216 CAGATCTTTGTGAAGACCCTTACGGGTAAGACCATCACCCTTGAGGTGGAGTCTTCGGAC 79275 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| ||||| |||||||| || |||||||| || |||||||| Sbjct 79276 ACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCTGACCAGCAG 79335 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||||||||||||||| || |||||||| || || | || ||| | || || ||| || Sbjct 79336 CGACTTATCTTCGCCGGTAAGCAGCTCGAGGACGGTCGCACCCTTTCGGACTACAACATC 79395 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || || ||||| Sbjct 79396 CAGAAGGAGTCCACCCTCCACCTTGT 79421 Score = 143 bits (158), Expect = 6e-29 Identities = 156/207 (75%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || || || | ||||| || || || |||||||| || || || ||| Sbjct 161494 CAAATCTTTGTCAAGACCTTGACAGGTAAGACCATTACCCTCGAAGTCGAGTCTTCGGAC 161435 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || |||||||| |||||||||||||| || |||||||| || |||||||| Sbjct 161434 ACCATTGACAACGTCAAGGCCAAGATTCAGGACAAGGAGGGAATCCCCCCTGACCAGCAG 161375 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||| ||||| ||||| || ||||| ||||| || | || ||| |||| || ||| | Sbjct 161374 CGACTCATCTTTGCCGGCAAGCAGCTGGAAGACGGCCGCACCCTTTCCGACTACAACATT 161315 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 || || ||||| || || || || ||| Sbjct 161314 CAGAAGGAATCCACTCTCCACCTCGTT 161288 Score = 116 bits (128), Expect = 9e-21 Identities = 108/137 (79%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || || ||||| || || || ||||| |||||||| || ||| ||| Sbjct 161722 CAGATCTTTGTAAAGACCCTCACCGGCAAGACCATCACTCTCGAGGTCGAGTCCTCGGAC 161663 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || ||||| |||||||||||||| || |||||||| || |||||||| Sbjct 161662 ACCATCGACAATGTCAAGGCCAAGATTCAGGACAAGGAGGGAATCCCCCCTGACCAGCAG 161603 Query 178044 CGACTTATCTTCGCCGG 178060 ||||| ||||| ||||| Sbjct 161602 CGACTCATCTTTGCCGG 161586 >seq247 Length=126104 Score = 123 bits (136), Expect = 6e-23 Identities = 139/186 (75%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 177944 CACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACA 178003 |||||| || || || ||||| |||||||| ||| ||||||||||| || || || Sbjct 70991 CACAGGTAAGACCATTACCCTTGAGGTGGAGTCCTCGGACACCATCGACAATGTTAAGGC 71050 Query 178004 AAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAA 178063 ||||||||||| || || || || || || |||||||| || || ||||||||||| || Sbjct 71051 CAAGATTCAGGATAAGGAGGGTATTCCCCCCGACCAGCAGCGCCTGATCTTCGCCGGTAA 71110 Query 178064 ACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCA 178123 |||||||| || || | || || | || || ||| |||| || || || || || || Sbjct 71111 GCAGCTCGAGGACGGCCGCACCCTCTCGGACTACAACATCCAGAAGGAGTCGACCCTCCA 71170 Query 178124 TCTTGT 178129 ||||| Sbjct 71171 CCTTGT 71176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203726604003812