Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20hordei_20[genbank_20GCA_5F000286035.1_202012-05-30] 713 sequences; 21,150,702 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq624 145 9e-30 >seq624 Length=65696 Score = 145 bits (160), Expect = 9e-30 Identities = 428/660 (65%), Gaps = 40/660 (6%) Strand=Plus/Plus Query 145640 TGAGCCTGGGAAAGGGCCGGGGGCTCCTGGTC-AGCTGGAGCTTCAGGGGCTCCACGTGG 145698 ||||| |||| |||||| || || | || ||||||| ||| || ||||| ||||| Sbjct 39819 TGAGCTTGGGGAAGGGCAATGGT-TCACGCTCGAGCTGGATCTTGAGTGGCTCTACGTGA 39877 Query 145699 TTGAGGTAGACGTGCGCGTCCCCCAGGACGTGGATGAAGTCCCCGGGCTCGAGGCCCGTG 145758 | ||||||||| ||||| |||| | | || ||| ||||||| | ||| Sbjct 39878 TCTTTGTAGACGTGAGCGTCTCCCATCGAAAGCACGAGTTCCTTGGGCTCGCAATCGGTG 39937 Query 145759 AGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGCACCCCCAGC 145818 | | |||| ||| || || |||| | ||||||||| ||||||||||| || |||| | Sbjct 39938 ACTTTAGCGATCATATAAGTGAGCAAAGCGTAGCTGGCAATGTTGAAGGGGACTCCCAAC 39997 Query 145819 CCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCT--------CCCCGCCC---- 145866 || | || | || || ||||||| || || ||||||| ||||| || Sbjct 39998 CCGAGATCGCAGGAACGTTGGTACATTTGACAAGAGAGCTGCTTCTTGCCCCGACCCTTT 40057 Query 145867 ------------------GCCACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCC 145908 | ||| |||||||||| | | |||||| || || || ||| Sbjct 40058 GCGTAAGCGTCGAGGTTGGAGACGAAGAACTGGCAGAACATGTGGCAAGGAGGGAGAGCC 40117 Query 145909 ATGGCGGGCAGGTCCGCCGGGTTCCAGGCGGTGAGGACGAGCCTCCTGCTCTC---GGGG 145965 ||| | || || |||||||| || |||| | || |||||| || |||| Sbjct 40118 ATGAGAGCAAGATCTTTGGGGTTCCATGCACTGAGCAAGA---TCCTGCGATCGGTGGGG 40174 Query 145966 TTCCTCTTGATCTCCCCTATCAGGTCCCTGAGCTGGTCCACGCCCTGCCCCCGGTAATCT 146025 || ||||||||| | || | || | | ||||| ||||| || || ||| || Sbjct 40175 TTGTTCTTGATCTTGTCAATGACTTCACGCAATTGGTCAACGCCTTGACCGGTGTAGTCG 40234 Query 146026 GTCTTGGAGTCCACGTACGCGGCCCCGAAGTGCCTCCACTGGAACCCGTAGACGGGCCCC 146085 || | | ||||| ||| | || || ||||| | ||| ||||| |||||||| || ||| Sbjct 40235 GTGTCGCAGTCCTTGTATTCTGCGCCAAAGTGTCGCCATTGGAAGCCGTAGACTGGACCC 40294 Query 146086 AGGTCCCCGGGCTC-CCTGTGCCCCAGCCCGGCCCGGGCGAGGAAGTCCCGGGACCCGTT 146144 | || || ||| || ||| || | | | ||||||| || || || ||||| Sbjct 40295 AAATCACC-TTCTCGCCGGTGTTGCAAGTCACGCGAGTCGAGGAACTCTCGTGATCCGTT 40353 Query 146145 GGCGTCCCAGATCTTGACGCCCCTCGCGGAGAGCTCATTGGAGTCCGTGGACCCCCTGAT 146204 |||||||||| | |||||| | | | || |||||||| || || | Sbjct 40354 ACCGTCCCAGATGTGCACGCCCTTGTCAGTAAGAAGCTTGGAGTCGGTCTTGCCAGCCAC 40413 Query 146205 GAACCAGAGCAGCTCTTCGAGGACCCCCCTCCAGAAGACCCTCTTGGTGGTCAGCAGGGG 146264 |||||||| ||||| || || || || | | ||||||| | ||| ||||| ||||| || Sbjct 40414 AAACCAGAGGAGCTCCTCCAGTACGCCTCGCAAGAAGACACGCTTTGTGGTGAGCAGAGG 40473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590071540940520