Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20hordei_20[genbank_20GCA_5F000286035.1_202012-05-30] 713 sequences; 21,150,702 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq580 379 2e-100 seq578 132 5e-26 seq650 122 9e-23 >seq580 Length=301176 Score = 379 bits (420), Expect = 2e-100 Identities = 429/571 (75%), Gaps = 9/571 (2%) Strand=Plus/Minus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||||||||||| || |||||||||| |||||| | ||||| Sbjct 41234 ATCTGGCAAATGTACAAGAAGGCCGAGGCTTCCTTCTGGACCGCCGAGGAAATCGACCTC 41175 Query 116696 TCCAAGGACACGAGCGACTGGGAGCGCTTG---AACGACAACGAGCGCCATTTCATCAAG 116752 ||||||||| ||||||||| | | |||||||||||||| || |||||| Sbjct 41174 TCCAAGGACCTTCACGACTGGGACAACAAGCTCAACGACAACGAGCGTCACTTCATCTCT 41115 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 ||||| || ||||| |||||||| ||||| ||||||||||| || || |||||||| Sbjct 41114 CACGTCCTTGCCTTCTTCGCCGCTTCTGACGGTATCGTCAACGAAAACCTCGTCGAGCGC 41055 Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872 ||| | ||||| |||| |||||||| || ||||||||||| || |||||| ||| Sbjct 41054 TTCAGTTCCGAGGTCCAGGCCGCCGAGGCCCGATGCTTCTACGGTTTCCAGATCATGATG 40995 Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAG 116932 |||||| | ||||| |||| || ||| |||||||||||| ||| | ||| | ||| Sbjct 40994 GAGAACATCCACTCCGAAACCTACTCGCTCCTCATCGACACCTACATCCGCGAGCCCGAG 40935 Query 116933 GAGA---AGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCC 116989 || || ||| || ||| |||| ||||||| || || |||||| |||||||| Sbjct 40934 CAGCGCGAGTTCCTCTT--TGA-CGCCGTCGAGACCATCCCCGTCGTCAAGAAGAAGGCC 40878 Query 116990 GAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCC 117049 || ||||| || || |||||| || | | ||||| |||||| ||||| || || ||| Sbjct 40877 GAATGGGCCCTTCGATGGATCAACGACCGCAAGGCCACCTTCGCTGAGCGTCTCGTTGCC 40818 Query 117050 TTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAG 117109 || || |||||||| || ||||||| || ||| || ||| | || || ||||||||| Sbjct 40817 TTTGCCGCCGTCGAAGGTATCTTCTTCTCAGGCTCCTTTGCCTCGATCTTCTGGCTCAAG 40758 Query 117110 AAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGT 117169 || ||||| ||||||||||| || || ||| |||||||||||||| | ||||||||| Sbjct 40757 AAGCGCGGTCTCATGCCCGGTCTCACCTTCTCTAACGAGCTCATCTCTCGTGACGAGGGT 40698 Query 117170 CTGCATTGCGACTTTGCCTGTTTGCTGTTCA 117200 || || ||| |||||||| | || |||| Sbjct 40697 CTTCACACCGATTTTGCCTGCCTCCTCTTCA 40667 >seq578 Length=360407 Score = 132 bits (146), Expect = 5e-26 Identities = 157/210 (75%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || | || ||||| |||||||| | || ||||| || | Sbjct 207311 ATGCAGATCTTTGTCAAGACTTTGACCGGCAAGACCATCACTCTTGAGGTCGAGTCCTCT 207370 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| || |||| ||||| ||||| || ||| | || || Sbjct 207371 GACACCATTGACAACG-TCAAGGCCAAGATTCAGGACAAGGAGGGTATTCCCCCTGATCA 207429 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || ||||||| || ||||| ||||| || || | ||||||||| ||||||||| Sbjct 207430 GCAGCGTCTCATCTTTGCCGGCAAGCAGCTTGAAGATGGCCGCACCCTCTCCGACTACAA 207489 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||||||| | || ||||||| || Sbjct 207490 CATCCAGAAGGAGTCGACTTTGCATCTTGT 207519 Score = 120 bits (132), Expect = 3e-22 Identities = 156/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || || || ||||| |||||||| || || |||||| |||| ||||| | Sbjct 306386 AAGATGCAGATCTTTGTTAAAACCCTCACGGGTAAGACGATCACCCTCGAGGTCGAGTCT 306327 Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | |||| | | | |||| |||||| || || | ||||| || || || ||| | || Sbjct 306326 TCGGACACCATCGACAACG-TCAAGGCCAAGATCCAGGACAAGGAAGGAATTCCCCCTGA 306268 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 ||||| || ||||||| || || || ||||| || || | |||||||| ||||| Sbjct 306267 TCAGCAGCGTCTCATCTTTGCTGGTAAGCAGCTCGAAGATGGTCGCACCCTTTCGGACTA 306208 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||||||| | || || || || || Sbjct 306207 CAACATCCAGAAGGAGTCTACCCTTCACCTCGT 306175 >seq650 Length=146785 Score = 122 bits (134), Expect = 9e-23 Identities = 140/186 (75%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 40714 ACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAGGA 40772 || || || ||||||||| | || || || | |||||| | | | |||| |||||| Sbjct 131109 ACAGGTAAGACCATCACCCTTGAGGTGGAGTCTTCCGACACCATCGACAACG-TCAAGGC 131051 Query 40773 AAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAA 40832 || || | ||||| ||||| |||||| | |||||||| || ||||||| || || || Sbjct 131050 CAAGATCCAGGACAAGGAGGGTATCCCCCCCGACCAGCAGCGTCTCATCTTTGCTGGTAA 130991 Query 40833 ACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892 ||||| || |||| ||||||||| ||||||||||||||||||||| |||| || || Sbjct 130990 GCAGCTCGAGGACGGCCGCACCCTCTCGGACTACAACATCCAGAAGGAGTCCACCCTTCA 130931 Query 40893 TCTAGT 40898 || || Sbjct 130930 CCTTGT 130925 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515214608108880