Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20hordei_20[genbank_20GCA_5F000286035.1_202012-05-30] 713 sequences; 21,150,702 total letters Query= NC_002167.1 Length=39732 Score E Sequences producing significant alignments: (Bits) Value seq319 1142 0.0 >seq319 Length=680 Score = 1142 bits (1266), Expect = 0.0 Identities = 664/682 (97%), Gaps = 2/682 (0%) Strand=Plus/Minus Query 28429 ACAGCCTGCTCAGGGTCAACCAGAATTAACATCCCGTCAGGAAAACTAGGTTTGGATCCT 28488 |||||||||||||||||||| ||||||||||| ||||||||||| || || ||||| ||| Sbjct 680 ACAGCCTGCTCAGGGTCAACGAGAATTAACATTCCGTCAGGAAAGCTTGGCTTGGAGCCT 621 Query 28489 GTTGGCGCGGTCATGGAATTACCTTCAACCTCAAGCCAGAATGCAGAATCACTGGCTTTT 28548 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 620 GTTGGTGCGGTCATGGAATTACCTTCAACCTCAAGCCAGAATGCAGAATCACTGGCTTTT 561 Query 28549 TTGGTTGTGCTTACCCATCTCTCCGCATCACCTTTGGTAAAGGTTCTAAGCTCAGGCGAG 28608 |||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| ||| Sbjct 560 TTGGTT-TGCTTACCCATCTCTCCGCATCACCTTTGGTAAAGGTTCTAAGCTTAGGTGAG 502 Query 28609 AACATCCCGGCCTGAACATGAGAAAAAACAGGGTACTCATACTCACTTCTAAGTGACGGC 28668 |||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 501 AACATCCCTGCCTGAACATGAGAAAAAACAGGGTACTCATAC-CACTTCTAAGTGACGGC 443 Query 28669 TGCATACTAACCGCTTCATACATCTCGTAGATTTCTCTGGCGATTGAAGGGCTAAATTCT 28728 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 442 TGCATACTAACCGCTTCATACATCTCGTAGATTTCTCTGGCGATTGAAGGGCTAAATTCT 383 Query 28729 TCAACGCTAACGTTGAGAATTTTTGCAAGCAATGCGGCGTTATAAGCATTTAATGCATTG 28788 ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 382 TCAACGCTAACTTTGAGAATTTTTGTAAGCAATGCGGCGTTATAAGCATTTAATGCATTG 323 Query 28789 ATGCCATTAAATAAAGCACCAACGCCTGACTGTCCCATCCCCATCTTGTCTGCGACAGAT 28848 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 322 ATGCCATTAAATAAAGCACCAACGCCTGACTGCCCCATCCCCATCTTGTCTGCGACAGAT 263 Query 28849 TCCTGGGATAAGCCAAGTTCAtttttctttttttCATAAATAGCTTTAAGGCGACGTGCG 28908 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 262 TCCTGGGATAAGCCAAGTTCATTTTTCTTTTTTTCATAAATTGCTTTAAGGCGACGTGCG 203 Query 28909 TCCTCAAGCTGCTCTTGTGTTAATGGTTTCTTTTTTGCGCTCATACGTTAAATCTATCAC 28968 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 202 TCCTCAAGCTGCTCTTGTGTTAATGGTTTCTTTTTTGTGCTCATACGTTAAATCTATCAC 143 Query 28969 CGCAAGGGATAAATATCTAACACCGTGCGTGTTGACTATTTTACCTCTAGCGGTGATAAT 29028 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 142 CGCAAGGGATAAATATCTAACACCGTGCGTGTTGACTATTTTACCTCTGGCGGTGATAAT 83 Query 29029 GGTTGCATGTACTAAGGAGGTTGTATGGAACAACGCATAACCCTGAAAGATTATGCAATG 29088 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 82 GGTTGCATGTACTAAGGAGGTTGTATGGAACAACGCATAACCCTGAAAGATTATGCAATG 23 Query 29089 CGCTTTGGGCAAACCAAGACAG 29110 |||||||||||||||||||||| Sbjct 22 CGCTTTGGGCAAACCAAGACAG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127019724530764