Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20hordei_20[genbank_20GCA_5F000286035.1_202012-05-30] 713 sequences; 21,150,702 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq555 159 7e-34 >seq555 Length=342432 Score = 159 bits (176), Expect = 7e-34 Identities = 412/626 (66%), Gaps = 9/626 (1%) Strand=Plus/Plus Query 248818 TACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAG 248877 ||| | ||||| | |||||| || || ||| ||| || | ||| || | |||||| Sbjct 63284 TACAACTTCTTCGGTTTCAAGACCCTCGAGCGATCCTACTTGCTCCGTATCAACGGCAAG 63343 Query 248878 ATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGAC 248937 ||| || || ||||||||| | ||||| || |||||||| |||||| | ||| Sbjct 63344 GTCGCTGAGCGTCCCCAGCACATGATCATGCGTGTTGCTGTCGGTATTCACGGCCAGGAC 63403 Query 248938 ATAGAGAGCGTGCTCGAGACGTACACCGGAATGAGTGAACGCTGGATGACACATGCCACA 248997 || ||||| | | |||||||||| | ||| || | | || |||||| | Sbjct 63404 ATTGAGAGTGCTATTGAGACGTACAACCTCATGTCGCAAAAGTACTTTACTCATGCCTCG 63463 Query 248998 CCGACGCTCTTCAACGCCGGTACCGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTGCC 249057 || ||||||||||||||||||||| | || |||||| ||||| || ||| | || Sbjct 63464 CCAACGCTCTTCAACGCCGGTACCCCCCACCCTCAGCTCTCGTCGTGTTTCCTTGTCACC 63523 Query 249058 ATGCAAGACGACTCTGTCGACGGCATTTATGACACGCTTAAACAGAC---GGCGAAGATT 249114 ||| | || ||||| ||||||| || || ||||| || | |||| || | ||| Sbjct 63524 ATGAAGGATGACTCGATCGACGGGATCTACGACACCCTCA---AGACCTGTGCCATGATC 63580 Query 249115 TCTAAATTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGTAC 249174 || || ||| || || ||||||||| | || ||| || | | || || ||| Sbjct 63581 TCCAAGACCGCCGGTGGTATCGGTCTCAACATCCATTGCATTCGTGGTACCGGCTCTTAC 63640 Query 249175 ATCAAAGGTACAAATGGGGTCAGTGATGGTATCGTACCCCTCCTTCGATGCTTTGAGTCC 249234 || ||||| || || ||||| | |||||||| ||| | || || ||| | | Sbjct 63641 ATTGCCGGTACCAACGGTGTCAGCAACGGTATCGTGCCCATGCTCCGTGTCTTCAACAAC 63700 Query 249235 ACCGCCAGGTTCATCAACCAGGCCGGGCGC---CGAAAGGGGTCGTTCGCCATGTATTTG 249291 || || | | | || |||| | || | || || | || || || || | Sbjct 63701 ACTGCTCGTTACGTCGACCAAGGTGGTAACAAGCGTCCTGGTGCCTTTGCTATCTACATT 63760 Query 249292 GAAGTGTGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAGAACAACGGCAACGAG 249351 || |||||| | ||| | || |||||||| |||||| |||||| |||| || ||| Sbjct 63761 GAGCCTTGGCACTCGGATGTCTTTGAGTTCCTCGACTTGCGCAAGAACCACGGTAAGGAG 63820 Query 249352 CTCATGAGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGACTTGTTCATGCGCCGC 249411 | | || ||||| |||||||||| || |||||| |||| | |||||| | Sbjct 63821 GAAGTTCGTGCCCGTGAGCTCTTCTACGCTCTTTGGGTCCCCGATCTCTTCATGAAGAGG 63880 Query 249412 GTCAAGGCCGACGGCGATTGGACGCT 249437 ||| || | ||||||||| |||| Sbjct 63881 GTCGAGCAGAATGGCGATTGGTCGCT 63906 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073756590808384