Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20hordei_20[genbank_20GCA_5F000286035.1_202012-05-30] 713 sequences; 21,150,702 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq555 343 1e-89 seq580 203 3e-47 seq578 98.7 9e-16 >seq555 Length=342432 Score = 343 bits (380), Expect = 1e-89 Identities = 1222/1887 (65%), Gaps = 54/1887 (3%) Strand=Plus/Minus Query 22114 TGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGCCCGTCTTCAG 22173 ||| || || | ||||| | || || ||||| || || || || | |||||||| || Sbjct 65113 TGTGAATTGAACAGCGTTGGATGCTGGCTTGGTACGGAGGTAGTAGGTACCCGTCTTGAG 65054 Query 22174 ACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTCGGCAAGTCCAT 22233 |||| ||||||| ||||||| || ||||| || | | || | | || | || Sbjct 65053 ACCCTTCTTCCAGCCGTAAAAGTGCATCGAAGTGAGCTGACCGAACGTAGGAGCGGACAG 64994 Query 22234 GTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGGCCATATTTAT 22293 || | ||||| |||||| ||| || || || ||||||||||||||||| | || Sbjct 64993 GTGGATATTGAGCGACTGCGACTGGCAAATGAAAGCACCTCGATCGGCGGCCATGTCGAT 64934 Query 22294 CAATGTACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGATCTCTAACGGTAT 22353 | | | ||| || ||||| || |||||||| || | | |||| ||||| Sbjct 64933 GATGGCCTTCTGCGAGATCTCCCAGACAGTCTTGTAGAGCTTCTTGAT-----ACGGTCG 64879 Query 22354 CG-ATTC----GATCCTCTGGACGGACCCGTTATTGTGT---ATGATCAAATTTTTAATC 22405 | || | || | |||| ||| || | ||| ||||| || || || Sbjct 64878 GGGATACCGGGGACGTTTTGGATGGAGCC---ACCGTGAGCGATGATTCGGTTCTTCATT 64822 Query 22406 GTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCACTTGA 22465 || |||||||| | || || ||| || || || |||| || || || Sbjct 64821 GTGTCGTTCCAAAGTCCCTGTTCGACCAACTCGCGGAGCAACCAGGGGTTGACGACCTGG 64762 Query 22466 AACTCGCCGGACAAG-ACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATTC 22524 || || || | |||| || || || ||| |||||||| ||| | || ||||| | || Sbjct 64761 AATTCACCAG-CAAGTACACGACGAGAGTAGATGTTGGAAGTGTAGGGCTCGAAGCACTC 64703 Query 22525 ATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGTT 22584 ||| |||| |||||| ||||||||| || ||||| || ||||||| || ||||| Sbjct 64702 GTTGAAGCCCAAGATCTGACTGGTCGAAGCAGTGGGCATGGGTGCCAACAAAAGTGAGTT 64643 Query 22585 TCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGACCAGTCCCACAGATCGGACGG 22644 | | |||||||| | || ||| ||||||| | ||||||||| || ||||| || Sbjct 64642 ACGAAGACCGTGCTTGGCGATGTTAGCCTTGAGCGAAGCCCAGTCCCAGAGGTCGGAGGG 64583 Query 22645 CGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGGGCTGCCTTCGTA 22704 || ||| ||||||| ||||| || | | || | || || |||| ||| Sbjct 64582 AGTGACAC---CCCACATGTCGTACTGAAGTTCTCCCTGGGAAGCGGGCGAACCTTGGTA 64526 Query 22705 CGTTTCGTACGGACCATATATCGCGGCAAGTTCGCA-GCTCGCCTCCAACGCGCCGTAAT 22763 || ||||| | || | | || | ||||| | |||| || | ||| ||| | Sbjct 64525 TGTCTCGTAGGTGCCGTGCTCCTGAGCCAACTCGCACGATCGC-TCGAGAGCGGCGTGGT 64467 Query 22764 ATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCG-GC----GGCGACGCTTTCGTACGG 22818 | || ||||||||||| | | |||||| || || || || ||| ||| | || Sbjct 64466 AGATGGTCTCGAAGATCTGCACGTTCAAA-CGACGCGCCTCAGGGGAC----TCGAA-GG 64413 Query 22819 CATACGC-ATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCGGT 22877 ||||| | || |||| ||| || || || | ||||||||| || |||||||| || |||| Sbjct 64412 CATACCCCATGATCATGAATGCATCGGCGAGACCCTGAACACCGATACCGATGGGACGGT 64353 Query 22878 TTTTCAGATTCGACACTTTTGCCTCGGGCAAAGGATACCAATTCGAATCGATTGTTCTGT 22937 || || || || || | || || | || ||||| | ||| Sbjct 64352 GACGCATGTTGGATCGACGAGCTTCTTCAACGGGGTAATAGTTGATGTCGATGATCTTGT 64293 Query 22938 TCAAGTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAACGCCCG 22997 ||||||| || | ||| | | | ||| ||||| || | Sbjct 64292 TCAAGTTCTTGCAGATGGCTTTGGCGACCTCATGCAGACGCTTAAAATCGTAGACCTTGG 64233 Query 22998 ----ATTGTACAACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCG 23053 | || | | || || || |||||| ||||| | ||||| || || ||||| Sbjct 64232 TAACAGGGT-CGATGAAGGTGGGGAGGGCGATGGAGGCCAAGTTGCAGACAGCGACCTCA 64174 Query 23054 TCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAA 23113 || || | |||||| | |||||||| || || ||| ||||| || || || | Sbjct 64173 TCGGGGGCAGAGTACTCGATGATTTCGGTGCAGAGGTTGGAGCACTTGATGGTACCGAGG 64114 Query 23114 TTGCTCTGGTTGCTTTTTCGATT-GCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGT 23172 || |||||||| || || || ||| | ||||||||||| ||| | || | || || Sbjct 64113 TTCTTCTGGTTGGACTTGCGGTTAGCA-GCGTCCTTGTAGAGGATGAAAGGATTACCGGT 64055 Query 23173 CTCGACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGTCGCACGTA 23232 |||| ||| ||||||| ||| || ||| | |||| || | || |||| | Sbjct 64054 CTCGGTCTGAGACTCGAGGATGGCGTACCAGAGCTTCTGGGCCTTGACGGTTCGCTTACA 63995 Query 23233 CCTGCCTTCTTCCTCGTACTTTTGGTACA-ACGCGTCAAATTCGGCACCGTAACAGTCGG 23291 | || || ||||||| | ||| | |||| ||||| ||| ||||||| ||||||| Sbjct 63994 GCGTCCCTCAGCCTCGTAGCGCTCGTAGAGACGC-TCAAACTCGTCACCGTAGCAGTCGG 63936 Query 23292 CCAGGCCGGGCGATTGCATCGGACACATGAGACTCCACATTG--AGTCATTTTCAACGCG 23349 | |||||||| | | | || |||||||| ||| || | | || | || || | Sbjct 63935 CAAGGCCGGGGCACTCGTTGGGGCACATGAGCGACCA-ATCGCCATTC-TGCTCGACCCT 63878 Query 23350 TCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTC 23409 |||| || ||||| || | ||| ||||||||||| || || ||||| || || ||||| Sbjct 63877 CTTCATGAAGAGATCGGGGACCCAAAGAGCGTAGAAGAGCTCACGGGCACGAACTTCCTC 63818 Query 23410 TTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAG 23469 || ||| |||||| ||| || | || || || || |||| ||||| ||||| | Sbjct 63817 CTTACCGTGGTTCTTGCGCAAGTCGAGGAACTCAAAGACATCCGAGTGCCAAGGCTCAAT 63758 Query 23470 GTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTT 23529 ||| | ||||| || || || | ||| || || || || ||||||||||| || ||||| Sbjct 63757 GTAGATAGCAAAGGCACCAGGACGCTTGTTACCACCTTGGTCGACGTAACGAGCAGTGTT 63698 Query 23530 GTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACT 23589 |||| | || | ||||| ||||||| ||||||| | ||| || || | Sbjct 63697 GTTGAAGACACGGAGCATGGGCACGATACCGTTGCTGACACCGTTGGTACCGGCAATGTA 63638 Query 23590 CGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATAT 23649 || || | | |||| | || | || || ||| || || ||| | | || || || Sbjct 63637 AGAGCCGGTACCACGAATGCAATGGATGTTGAGACCGATACCACCGGCGGTCTTGGAGAT 63578 Query 23650 CATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGAC 23709 ||| || || || || ||||||||||| || ||||| ||| || || | | ||| Sbjct 63577 CATGGCACAGGTCTTGAGGGTGTCGTAGATCCCGTCGATCGAGTCATCCTTCATGGTGAC 63518 Query 23710 CAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGC 23769 | ||||||||| || | || | | ||| ||| |||| ||| || || || ||| Sbjct 63517 AAGGAAACACGACGAGAGCTGAGGGTGGGGGGTACCGGCGTTGAAGAGCGTTGGCGAGGC 63458 Query 23770 GTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTC 23829 || |||||||| | |||||| || |||||||| || || || |||||||||| Sbjct 63457 ATGAGTAAAGTACTTTTGCGACATGAGGTTGTACGTCTCAATAGCACTCTCAATGTCCTG 63398 Query 23830 TCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCT---CGACCGTGAC 23886 ||||| ||||||| || || ||||| ||||||| || || | || ||||| | Sbjct 63397 GCCGTGAATACCGACAGCAACACGCATGATCATGTGCTGGGGACGCTCAGCGACCTT--- 63341 Query 23887 GCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTT 23946 |||||| || || || || || || | | || || || || || ||| |||| Sbjct 63340 GCCGTTGATACGGAGCAAGTAGGATCGCTCGAGGGTCTTGAAACCGAAGAAGTTGTAGTG 63281 Query 23947 AAAGTCACGATCGTGCACTATGGCCGA 23973 ||||| || |||| | |||||||| Sbjct 63280 GAAGTCGCGCTCGTAGATGATGGCCGA 63254 >seq580 Length=301176 Score = 203 bits (224), Expect = 3e-47 Identities = 489/734 (67%), Gaps = 27/734 (4%) Strand=Plus/Minus Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629 || ||| | |||||||| ||||| || || || || ||||||| ||| ||| | ||||| Sbjct 41234 ATCTGGCAAATGTACAAGAAGGCCGAGGCTTCCTTCTGGACCGCCGAGGAAATCGACCTC 41175 Query 57630 TCTAAGGATCTGAGCGATTGGGATTCC---CTCAAAGAATCTGAGAGAAATTTTATTAAA 57686 || ||||| || ||| ||||| | ||||| || ||| | | || || Sbjct 41174 TCCAAGGACCTTCACGACTGGGACAACAAGCTCAACGACAACGAGCGTCACTTCATCTCT 41115 Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746 ||||| | || || |||||||| || || ||||| || ||||| || | ||||| | Sbjct 41114 CACGTCCTTGCCTTCTTCGCCGCTTCTGACGGTATCGTCAACGAAAACCTCGTCGAGCGC 41055 Query 57747 TT---TTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCC 57803 || ||| || || || | | ||||| ||||||| ||||| || || | Sbjct 41054 TTCAGTTCC---GAGGTCCAGGCCGCCGAGGCCCGATGCTTCTACGGTTTCCAGATCATG 40998 Query 57804 ATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAAC 57863 || || ||| | || || |||| || ||||| |||||||| || ||| | | | Sbjct 40997 ATGGAGAACATCCACTCCGAAACCTACTCGCTCCTCATCGACACCTACAT------CCGC 40944 Query 57864 GA---CGAGAAACGT-AGA--CTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAG 57917 || |||| | || || || || |||| |||| || || |||| || ||| Sbjct 40943 GAGCCCGAGCAGCGCGAGTTCCTCTTTGACGCCGTCGAGACCATCCCCGTCGTCAAGAAG 40884 Query 57918 AAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTA 57977 ||||| || ||| | | |||||| || | || |||||| ||||| ||| | || Sbjct 40883 AAGGCCGAATGGGCCCTTCGATGGATCAACGACCGCAAGGCCACCTTCGCTGAGCGTCTC 40824 Query 57978 ATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGG 58037 | || || ||||||||||||||||| ||||| || ||| |||||| | || || ||| Sbjct 40823 GTTGCCTTTGCCGCCGTCGAAGGTATCTTCTTCTCAGGCTCCTTTGCCTCGATCTTCTGG 40764 Query 58038 ATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGAC 58097 | ||||| ||||| || |||||||| || || || |||||| | || || || ||| Sbjct 40763 CTCAAGAAGCGCGGTCTCATGCCCGGTCTCACCTTCTCTAACGAGCTCATCTCTCGTGAC 40704 Query 58098 GAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAAC---CG 58154 |||||||| || || |||||||| ||||| | | | ||| |||| || | || Sbjct 40703 GAGGGTCTTCACACCGATTTTGCCTGCCTCCTCTTCAGCCAC---CTCAAGAAGCGCGCG 40647 Query 58155 ACGCGGGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTC 58214 | || | || | | || || |||||||||||| ||||| | ||||| | Sbjct 40646 CACCCCGACACCGTCCTCAAGATCATTTCCGAGGCGGTCGAAATCGAGATCGAGTTCTTG 40587 Query 58215 ACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATT 58274 ||| || | | || || ||| |||| |||||| | |||||||| |||||||| Sbjct 40586 ACCCAATCAATTCCTTGTGCAATGATCGGCATGAACCAAACGTTGATGTCTCAGTACATT 40527 Query 58275 GAGTTTGTTGCCGA 58288 ||||| ||||| Sbjct 40526 ACCTTTGTGGCCGA 40513 >seq578 Length=360407 Score = 98.7 bits (108), Expect = 9e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| || || ||||| || |||||| |||| || || || || Sbjct 207083 ATGCAGATCTTTGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGCCTTCG 207142 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | ||||| | || |||||||||||| | || || || ||| Sbjct 207143 GACACCATTGACAATGTCAAGGCCAAGATCCAGGACAAGGAAGGAATTCCTCCTGATCAG 207202 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || ||||||||||| ||| | || || || | ||||| ||| Sbjct 207203 CAGCGTCTCATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGTACCCTCTCGGATTACAAC 207262 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| ||||| || || |||||||| || || Sbjct 207263 ATTCAGAAAGAGTCCACCCTTCATCTCGTTCT 207294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445762427106960