Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20hordei_20[genbank_20GCA_5F000286035.1_202012-05-30] 713 sequences; 21,150,702 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq580 105 1e-17 seq555 87.8 4e-12 >seq580 Length=301176 Score = 105 bits (116), Expect = 1e-17 Identities = 164/233 (70%), Gaps = 5/233 (2%) Strand=Plus/Minus Query 101844 TCCCCGCCATCAAGAAGAAGGAGCAGTGGGCTATTAATTGGATGCAAAG----CAATAAC 101899 |||||| | |||||||||||| | ||||| || ||||| ||| | ||| | Sbjct 40900 TCCCCGTCGTCAAGAAGAAGGCCGAATGGGCCCTTCGATGGAT-CAACGACCGCAAGGCC 40842 Query 101900 GATTTGGCGGAACTAATTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCA 101959 || || || | | ||||||||||| || || ||||| |||||||| || | Sbjct 40841 ACCTTCGCTGAGCGTCTCGTTGCCTTTGCCGCCGTCGAAGGTATCTTCTTCTCAGGCTCC 40782 Query 101960 TTCGCATCCATTTTCTGGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAAT 102019 || || || || |||||| ||||||| | ||| | |||| |||||||||| ||| || Sbjct 40781 TTTGCCTCGATCTTCTGGCTCAAGAAGCGCGGTCTCATGCCCGGTCTCACCTTCTCTAAC 40722 Query 102020 GAGTTCATTTCTAGGGACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTT 102072 ||| |||| ||| | ||||| |||||||| ||| ||||| ||| | || || Sbjct 40721 GAGCTCATCTCTCGTGACGAGGGTCTTCACACCGATTTTGCCTGCCTCCTCTT 40669 >seq555 Length=342432 Score = 87.8 bits (96), Expect = 4e-12 Identities = 421/655 (64%), Gaps = 26/655 (4%) Strand=Plus/Minus Query 94399 CCTTCAGCCTCATATTTCTCGTACA-ACGCCTTAAACTCTTCGCCATGGACGTCGGAAAG 94457 || |||||||| || |||||| | |||| | |||||| || || | | ||||| ||| Sbjct 63990 CCCTCAGCCTCGTAGCGCTCGTAGAGACGC-TCAAACTCGTCACCGTAGCAGTCGGCAAG 63932 Query 94458 GCCAGGGCACTCGTGGGGGCACATCAGGGACCAATTCTTCCCAGCCTTC---ACTCTCTC 94514 ||| |||||||||| ||||||||| || ||||||| ||| || | || |||| Sbjct 63931 GCCGGGGCACTCGTTGGGGCACATGAGCGACCAATCG---CCATTCTGCTCGACCCTCTT 63875 Query 94515 CATGAAGAGATCAGATACCCAGATAGCTGGGAAAAGATCCCTCGTCCTCAAA--TCTTCA 94572 |||||||||||| | ||||| | ||| | | |||| | | || | | || || || Sbjct 63874 CATGAAGAGATCGGGGACCCAAAGAGC--GTAGAAGAGCTCACGGGCACGAACTTCCTCC 63817 Query 94573 TTACCGGCATTCTTTCTGCAGTCAATAAAGTCCTTCACGTCCAGATGCCAATCAGAAATA 94632 |||||| ||||| | |||| | || || || ||| |||||| ||| Sbjct 63816 TTACCGTGGTTCTTGCGCAAGTCGAGGAACTCAAAGACATCCGAGTGCCAAGGCTCAATG 63757 Query 94633 TAGATGGCTGCAGCTCCTCTCCTCTTGTCTCCTCCCTGGCTAACCTTTTTCACAGAGACG 94692 ||||| || || || | ||||| || || ||| || | ||| | | Sbjct 63756 TAGATAGCAAAGGCACCAGGACGCTTGTTACCACCTTGGTCGACGTAACGAGCAGTGTTG 63697 Query 94693 TTAAAGATTTGGAGGAACGCCATGAGACCAGGGTGGGTACCACTCCATG--AC--GAAAT 94748 || |||| |||| | | || || ||| || | | ||| | || || | ||| Sbjct 63696 TTGAAGACACGGAGCATGGGCACGATACC---GTTGCTGACAC-CGTTGGTACCGGCAAT 63641 Query 94749 GGGGCTTCCTTTTGCCCTCAAATC--ATGAAAGTGGATGCCGAGTCCTCCAGCAGTCTTG 94806 | || | || | ||| ||| | || || |||| || || || |||||| Sbjct 63640 GTAAGAGCCGGTA--CCACGAATGCAATGGATGTTGAGACCGATACCACCGGCGGTCTTG 63583 Query 94807 GAGATGATTGCCGCCTCCTTAAGAGTATCATAAATACCCTCAATGCTATCATCTTGAAGG 94866 ||||| || || ||| || || || || || || || || ||||| | | | Sbjct 63582 GAGATCATGGCACAGGTCTTGAGGGTGTCGTAGATCCCGTCGATCGAGTCATCCTTCATG 63523 Query 94867 CCCAGAAGGAAGCACGAGGAAAGTTG-GGGTGTGACTGTTCCACAATTAAACAGTGTGGG 94925 | |||||| ||||| || || || ||||| | || || || || || || || Sbjct 63522 GTGACAAGGAAACACGACGAGAGCTGAGGGTG-GGGGGTACCGGCGTTGAAGAGCGTTGG 63464 Query 94926 GGAAGCATGGGTAAAATAGTGCCTCGACATGAGATCATATGTTTCAATGACAGATTTGAT 94985 || ||||| ||||| || | ||||||||| | || || ||||| || | || Sbjct 63463 CGAGGCATGAGTAAAGTACTTTTGCGACATGAGGTTGTACGTCTCAATAGCACTCTCAAT 63404 Query 94986 GTCTGATCCGTGAATGCCGACAGCCACACGCATAATCATGTCCTGAGGGCGCTCA 95040 ||| |||||||| |||||||| |||||||| ||||||| ||| || |||||| Sbjct 63403 GTCCTGGCCGTGAATACCGACAGCAACACGCATGATCATGTGCTGGGGACGCTCA 63349 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989574959840915