Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20hordei_20[genbank_20GCA_5F000286035.1_202012-05-30] 713 sequences; 21,150,702 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq555 140 4e-28 seq580 116 5e-21 >seq555 Length=342432 Score = 140 bits (154), Expect = 4e-28 Identities = 440/681 (65%), Gaps = 8/681 (1%) Strand=Plus/Minus Query 63234 GGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATC 63293 || ||||| | |||||| || || | | || || | ||||| |||||||| || | | Sbjct 63915 GGGCACATGAGCGACCAATCGCCATTCTGCTCGACCCTCTTCATGAAGAGATCGGGGACC 63856 Query 63294 CAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGA 63353 |||||||| || || || | | | | |||||| || || ||||| | Sbjct 63855 CAAAGAGCGTAGAAGAGCTCACGGGCACGAACTTCCTCCTTACCGTGGTTCTTGCGCAAG 63796 Query 63354 TCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGC 63413 ||||||||| | | | ||| || ||||| || || | ||| || || | | ||||| Sbjct 63795 TCGAGGAACTCAAAGACATCCGAGTGCCAAGGCTCAATGTAGATAGCAAAGGCACCAGGA 63736 Query 63414 CGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGA 63473 || ||||| || || || || | ||| | ||| ||||| || | || | | ||| || Sbjct 63735 CGCTTGTTACCACCTTGGTCGACGTAACGAGCAGTGTTGTTGAAGACACGGAGCATGGGC 63676 Query 63474 ATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTA 63533 | |||||||| | ||| |||||||||| || || || | ||||||| Sbjct 63675 ACGATACCGTTGCTGACACCGTTGGTACCGGCAATGTAAGAGCCGGTACCACGAATGC-- 63618 Query 63534 CTAATTGAT----AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAA 63589 ||| ||| ||||| || || || || | || ||||| | || || || | Sbjct 63617 --AATGGATGTTGAGACCGATACCACCGGCGGTCTTGGAGATCATGGCACAGGTCTTGAG 63560 Query 63590 CGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACAT 63649 ||||| ||||| || || || ||||| ||||| | | || ||||| || | Sbjct 63559 GGTGTCGTAGATCCCGTCGATCGAGTCATCCTTCATGGTGACAAGGAAACACGACGAGAG 63500 Query 63650 TTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTC 63709 || | | | || || || || || | || || || || || ||||| | |||| Sbjct 63499 CTGAGGGTGGGGGGTACCGGCGTTGAAGAGCGTTGGCGAGGCATGAGTAAAGTACTTTTG 63440 Query 63710 AGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGC 63769 || | || ||||||||||||||||| || || ||| ||||| || || || Sbjct 63439 CGACATGAGGTTGTACGTCTCAATAGCACTCTCAATGTCCTGGCCGTGAATACCGACAGC 63380 Query 63770 GACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTA 63829 |||||||| | ||||||||| || | ||| | | ||| ||| || | |||||| Sbjct 63379 AACACGCATGATCATGTGCTGGGGACGCTCAGCGACCTTGCCGTTGATACGGAGCAAGTA 63320 Query 63830 GGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63889 |||| || | || || ||||| || ||||||| ||||| || ||||| || || Sbjct 63319 GGATCGCTCGAGGGTCTTGAAACCGAAGAAGTTGTAGTGGAAGTCGCGCTCGTAGATGAT 63260 Query 63890 AACCGAATTGAGCTTATCCTT 63910 |||| | ||||| ||||| Sbjct 63259 GGCCGAGTCGAGCTGGTCCTT 63239 >seq580 Length=301176 Score = 116 bits (128), Expect = 5e-21 Identities = 173/245 (71%), Gaps = 3/245 (1%) Strand=Plus/Plus Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 || || |||||| ||| ||||||||||| | | || | |||||||| || ||||| Sbjct 40678 CAGGCAAAATCGGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTAGAGAAGGTGAGA 40737 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 |||||||| || || ||||| || ||||| || || || || || || || || |||||| Sbjct 40738 CCGGGCATGAGACCGCGCTTCTTGAGCCAGAAGATCGAGGCAAAGGAGCCTGAGAAGAAG 40797 Query 33702 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGC---GCTGTCATGT 33758 || ||||| || || |||||||||| || | ||| | | ||| || ||| | Sbjct 40798 ATACCTTCGACGGCGGCAAAGGCAACGAGACGCTCAGCGAAGGTGGCCTTGCGGTCGTTG 40857 Query 33759 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 33818 ||||| | ||||| ||||||||||| || || || || || || | ||| | | Sbjct 40858 ATCCATCGAAGGGCCCATTCGGCCTTCTTCTTGACGACGGGGATGGTCTCGACGGCGTCA 40917 Query 33819 AAGAG 33823 ||||| Sbjct 40918 AAGAG 40922 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629811986750640