Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20hordei_20[genbank_20GCA_5F000286035.1_202012-05-30] 713 sequences; 21,150,702 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq555 131 2e-25 seq580 107 3e-18 >seq555 Length=342432 Score = 131 bits (144), Expect = 2e-25 Identities = 438/681 (64%), Gaps = 8/681 (1%) Strand=Plus/Minus Query 66027 GGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATC 66086 || ||||| | |||||| || || | | || || | ||||| |||||||| || | | Sbjct 63915 GGGCACATGAGCGACCAATCGCCATTCTGCTCGACCCTCTTCATGAAGAGATCGGGGACC 63856 Query 66087 CAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGA 66146 |||||||| || | || | || | | |||||| || || ||||| | Sbjct 63855 CAAAGAGCGTAGAAGAGCTCACGGGCACGAACTTCCTCCTTACCGTGGTTCTTGCGCAAG 63796 Query 66147 TCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGC 66206 ||||||||| | | | ||| | ||||| || || | ||| || || | | ||||| Sbjct 63795 TCGAGGAACTCAAAGACATCCGAGTGCCAAGGCTCAATGTAGATAGCAAAGGCACCAGGA 63736 Query 66207 CGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGA 66266 || ||||| || || || || | ||| | ||| ||||| || | || | | ||| || Sbjct 63735 CGCTTGTTACCACCTTGGTCGACGTAACGAGCAGTGTTGTTGAAGACACGGAGCATGGGC 63676 Query 66267 ATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTA 66326 | ||||| ||| ||| ||||| |||| || || || | ||||||| Sbjct 63675 ACGATACCGTTGCTGACACCGTTGGTACCGGCAATGTAAGAGCCGGTACCACGAATGC-- 63618 Query 66327 CTAATTGAT----AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAA 66382 ||| ||| ||||| || || || || | || ||||| | || || || | Sbjct 63617 --AATGGATGTTGAGACCGATACCACCGGCGGTCTTGGAGATCATGGCACAGGTCTTGAG 63560 Query 66383 CGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACAT 66442 || || ||||| || || || |||||| ||||| | | || ||||| || | Sbjct 63559 GGTGTCGTAGATCCCGTCGATCGAGTCATCCTTCATGGTGACAAGGAAACACGACGAGAG 63500 Query 66443 TTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTC 66502 || | | || || || || || | || || || || || ||||| | |||| Sbjct 63499 CTGAGGGTGGGGGGTACCGGCGTTGAAGAGCGTTGGCGAGGCATGAGTAAAGTACTTTTG 63440 Query 66503 AGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGC 66562 || | || ||||||||||||||||| || || ||| ||||| || || || Sbjct 63439 CGACATGAGGTTGTACGTCTCAATAGCACTCTCAATGTCCTGGCCGTGAATACCGACAGC 63380 Query 66563 GACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTA 66622 |||||||| | ||||||||| || | ||| ||| |||| ||| || | |||||| Sbjct 63379 AACACGCATGATCATGTGCTGGGGACGCTCAGCGACCTTGCCGTTGATACGGAGCAAGTA 63320 Query 66623 GGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 66682 |||| || | || || ||||| || ||||||| ||||| || ||||| || || Sbjct 63319 GGATCGCTCGAGGGTCTTGAAACCGAAGAAGTTGTAGTGGAAGTCGCGCTCGTAGATGAT 63260 Query 66683 AACCGAGTTGAGTTTATCCTT 66703 |||||| ||| | ||||| Sbjct 63259 GGCCGAGTCGAGCTGGTCCTT 63239 >seq580 Length=301176 Score = 107 bits (118), Expect = 3e-18 Identities = 171/245 (70%), Gaps = 3/245 (1%) Strand=Plus/Plus Query 36158 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 36217 || || |||||| ||| ||||||||||| | | || | ||||| || || ||||| Sbjct 40678 CAGGCAAAATCGGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTAGAGAAGGTGAGA 40737 Query 36218 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 36277 |||||||| || || ||||| || ||||| || || || ||||| || || || ||||| Sbjct 40738 CCGGGCATGAGACCGCGCTTCTTGAGCCAGAAGATCGAGGCAAAGGAGCCTGAGAAGAAG 40797 Query 36278 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGC---ACTGTCATGT 36334 || ||||| || || |||||||||| || | ||| | | ||| | ||| | Sbjct 40798 ATACCTTCGACGGCGGCAAAGGCAACGAGACGCTCAGCGAAGGTGGCCTTGCGGTCGTTG 40857 Query 36335 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTA 36394 ||||| | ||||| ||||||||||| || || || || ||||| | || | | Sbjct 40858 ATCCATCGAAGGGCCCATTCGGCCTTCTTCTTGACGACGGGGATGGTCTCGACGGCGTCA 40917 Query 36395 AAGAG 36399 ||||| Sbjct 40918 AAGAG 40922 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658166934034920