Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20hordei_20[genbank_20GCA_5F000286035.1_202012-05-30] 713 sequences; 21,150,702 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq624 116 3e-21 >seq624 Length=65696 Score = 116 bits (128), Expect = 3e-21 Identities = 398/619 (64%), Gaps = 46/619 (7%) Strand=Plus/Plus Query 20925 AGGGGATCAACGTGGTTGTTGTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCC 20984 || || || ||||| | ||||| ||||| ||||| |||| | |||| | || | Sbjct 39863 AGTGGCTCTACGTGATCTTTGTAGACGTGAGCGTCTCCCATCGAAAGCACGAGTTC-CTT 39921 Query 20985 GGGGTCAGGC---CCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATG 21041 ||| || || | ||||| | |||||||| ||| || || | ||||||||||| ||| Sbjct 39922 GGGCTC--GCAATCGGTGACTTTAGCGATCATATAAGTGAGCAAAGCGTAGCTGGCAATG 39979 Query 21042 TTAAACGGGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCC 21101 || || ||||| || | || | ||| ||| | ||||||| || || || |||| | Sbjct 39980 TTGAAGGGGACTCCCAACCCGAGATCGCAGGAACGTTGGTACATTTGACAAGAGAGCTGC 40039 Query 21102 ------CCCCGAGCCA---CGTAA---------------------AACTGACACAAAACG 21131 |||||| || ||||| ||||| || || | | Sbjct 40040 TTCTTGCCCCGACCCTTTGCGTAAGCGTCGAGGTTGGAGACGAAGAACTGGCAGAACATG 40099 Query 21132 TGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGGTTCCACGCGCACATAACGATG 21191 || ||||||||||||||||| | || || || ||||||||| || | | | ||| Sbjct 40100 TGGCAAGGAGGGAGAGCCATGAGAGCAAGATCTTTGGGGTTCCATGCACTGAGCAAGATC 40159 Query 21192 CGCCGATC-GTGGGGCCGCCTGTTAATTAGATCCACCACGTAACGCAGCTGGTCCACCCC 21250 | ||||| |||||| | | || || || | || | ||||| ||||| || || Sbjct 40160 CTGCGATCGGTGGGGTTG-TTCTTGATCTTGTCAATGACTTCACGCAATTGGTCAACGCC 40218 Query 21251 CTGACCCTCGTAGTTGGCGTCGGCCCCCCTGTACTCCGCCCCAAAATGTCTCCACTGGAA 21310 ||||| ||||| || |||| || |||| || || ||||| |||| ||| ||||| Sbjct 40219 TTGACCGGTGTAGTCGGTGTCGCAGTCCTTGTATTCTGCGCCAAAGTGTCGCCATTGGAA 40278 Query 21311 CCCGTACACCGGCCCCAGATCGCCCTCGCGGCGGTCCCCGAAGCCCTGCGCCGCCAAAAA 21370 ||||| || || |||| ||| || || || |||| ||| | ||| | | || Sbjct 40279 GCCGTAGACTGGACCCAAATCACCTTCTCGCCGGTGTTGCAAGTCACGCGAGTCGAGGAA 40338 Query 21371 GGCGCGGGACCCGTGCGCGTCCCAAATTTTTACGCCGCGGCGCGACAGTTCG----GTGG 21426 | || || |||| ||||||| || | ||||| | | |||| | ||| Sbjct 40339 CTCTCGTGATCCGTTACCGTCCCAGATGTGCACGCC----CTTGTCAGTAAGAAGCTTGG 40394 Query 21427 AGTCGGTGGAGCCCCTGATAAACCACAGCAACTCCTCCACGACGCCCCTCCAAAACACCC 21486 ||||||| ||| | |||||| || | |||||||| ||||| | | | || || | Sbjct 40395 AGTCGGTCTTGCCAGCCACAAACCAGAGGAGCTCCTCCAGTACGCCTCGCAAGAAGACAC 40454 Query 21487 TTTTGGTGGTTAACAGAGG 21505 || ||||| | |||||| Sbjct 40455 GCTTTGTGGTGAGCAGAGG 40473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427772282760240