Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20hordei_20[genbank_20GCA_5F000286035.1_202012-05-30] 713 sequences; 21,150,702 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq556 84.2 2e-11 >seq556 Length=315907 Score = 84.2 bits (92), Expect = 2e-11 Identities = 106/143 (74%), Gaps = 2/143 (1%) Strand=Plus/Minus Query 33575 AGATGGGCGACAAGTTTGCATCGT-TCACGGCCCAGAAGGGCACGTGCGGCATGATGTAC 33633 ||| ||| ||||||||||| || |||||| | ||||||| ||| ||| || | ||| Sbjct 230830 AGACGGGTGACAAGTTTGCCTCTCGTCACGGTC-AGAAGGGTACGATCGGTATCACATAC 230772 Query 33634 GACCAGTGGGACATGCCGTTCACGGCCGACGGCGTGGTCCCGGACCTAGTCATCAACCCG 33693 |||| ||||||||||||| || | || || || || ||| | |||||||||| Sbjct 230771 CGCCAGGAGGACATGCCGTTCTCGACAGAGGGTGTCACACCAGACATCATCATCAACCCA 230712 Query 33694 CATGCGTTCCCCTCGCGCATGAC 33716 || || |||||||||| ||||| Sbjct 230711 CACGCCATCCCCTCGCGTATGAC 230689 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356230504441339