Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20hordei_20[genbank_20GCA_5F000286035.1_202012-05-30] 713 sequences; 21,150,702 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq555 141 1e-28 seq580 140 5e-28 >seq555 Length=342432 Score = 141 bits (156), Expect = 1e-28 Identities = 617/973 (63%), Gaps = 10/973 (1%) Strand=Plus/Minus Query 79615 GCGACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATTTCA 79674 |||| || |||| || || || || ||||||| | | | || | || ||||| Sbjct 64206 GCGATGGAGGCCAAGTTGCAGACAGCGACCTCATCGGGGGCAGAGTACTCGATGATTTCG 64147 Query 79675 GTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACAC 79734 ||||||||||| ||||| ||||| || | || | || || ||| |||| Sbjct 64146 GTGCAGAGGTTGGAGCACTTGATGGTACCGAGGTTCTTCTGGTTGGACTTGCGGTTAGCA 64087 Query 79735 GCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTC 79794 || ||||| || || ||||| ||| |||| || || ||||||| || | || || | | Sbjct 64086 GCGTCCTTGTAGAGGATGAAAGGATTACCGGTCTCGGTCTGAGACTCGAGGATGGCGTAC 64027 Query 79795 CAGACGACTC-GAGCCTTTATTATAGACTTGTATCTCTTTTCTCTTTCGTATTGTGTATA 79853 |||| | || | ||||| | | ||| | | || ||||| | || Sbjct 64026 CAGA-GCTTCTGGGCCTTGACGGTTCGCTTACAGCGTCCCTCAGCCTCGTAGCGCTCGTA 63968 Query 79854 TAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACAT 79913 | || || |||||||| || | ||| | | || || || |||| || ||||| Sbjct 63967 GAGACGCTCAAACTCGTCACCGTAGCAGTCGGCAAGGCCGGGGCACTCGTTGGGGCACAT 63908 Query 79914 CAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC 79973 | |||||| || |||| | || || | ||||| |||||||| || | ||||||||| Sbjct 63907 GAGCGACCAATCGCCATTCTGCTCGACCCTCTTCATGAAGAGATCGGGGACCCAAAGAGC 63848 Query 79974 TATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAA 80033 || || || | || | | ||||| || || ||||| | |||||||| Sbjct 63847 GTAGAAGAGCTCACGGGCACGAACTTCCTCCTTACCGTGGTTCTTGCGCAAGTCGAGGAA 63788 Query 80034 CGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTT 80093 | | | | ||| || ||||| || || | ||| || || | | || || || ||||| Sbjct 63787 CTCAAAGACATCCGAGTGCCAAGGCTCAATGTAGATAGCAAAGGCACCAGGACGCTTGTT 63728 Query 80094 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 80153 || || || || | ||| | ||| ||||| || | || | | ||| || | ||||| Sbjct 63727 ACCACCTTGGTCGACGTAACGAGCAGTGTTGTTGAAGACACGGAGCATGGGCACGATACC 63668 Query 80154 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 80213 ||| ||| ||||| |||| || || || | ||||||| ||| || Sbjct 63667 GTTGCTGACACCGTTGGTACCGGCAATGTAAGAGCCGGTACCACGAATGC----AATGGA 63612 Query 80214 T----AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCAT 80269 | ||||| || || || || | || ||||| | || || || | || || | Sbjct 63611 TGTTGAGACCGATACCACCGGCGGTCTTGGAGATCATGGCACAGGTCTTGAGGGTGTCGT 63552 Query 80270 AGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGAC 80329 |||| || || || ||||| ||||| | | || ||||| || | || | Sbjct 63551 AGATCCCGTCGATCGAGTCATCCTTCATGGTGACAAGGAAACACGACGAGAGCTGAGGGT 63492 Query 80330 GACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTA 80389 | || || || || || | || || || || || ||||| | |||| |||| | Sbjct 63491 GGGGGGTACCGGCGTTGAAGAGCGTTGGCGAGGCATGAGTAAAGTACTTTTGCGACATGA 63432 Query 80390 GATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCA 80449 | ||||||||||||||||| || || ||| ||||| || || || ||||||| Sbjct 63431 GGTTGTACGTCTCAATAGCACTCTCAATGTCCTGGCCGTGAATACCGACAGCAACACGCA 63372 Query 80450 TTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTT 80509 | | ||||||||| || | ||| ||| |||| || || | |||||| ||| | Sbjct 63371 TGATCATGTGCTGGGGACGCTCAGCGACCTTGCCGTTGATACGGAGCAAGTAGGATCGCT 63312 Query 80510 CCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGT 80569 | | || || ||||| || ||||||| ||||| || ||||| || || |||||| Sbjct 63311 CGAGGGTCTTGAAACCGAAGAAGTTGTAGTGGAAGTCGCGCTCGTAGATGATGGCCGAGT 63252 Query 80570 TGAGTTTATCCTT 80582 ||| | ||||| Sbjct 63251 CGAGCTGGTCCTT 63239 >seq580 Length=301176 Score = 140 bits (154), Expect = 5e-28 Identities = 366/557 (66%), Gaps = 6/557 (1%) Strand=Plus/Plus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || || |||||| ||| ||||||||||| | | || || ||||| || || ||||| Sbjct 40678 CAGGCAAAATCGGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTAGAGAAGGTGAGA 40737 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAG 50079 |||||||| || || ||||| || ||||| || || || ||||| || || || |||||| Sbjct 40738 CCGGGCATGAGACCGCGCTTCTTGAGCCAGAAGATCGAGGCAAAGGAGCCTGAGAAGAAG 40797 Query 50080 ATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGC---GCTGTCATGT 50136 || ||||| || |||||||||||||| || | ||| | | |||| || ||| | Sbjct 40798 ATACCTTCGACGGCGGCAAAGGCAACGAGACGCTCAGCGAAGGTGGCCTTGCGGTCGTTG 40857 Query 50137 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 50196 ||||| | ||||| ||||||||||| || || || || || || | ||| | | Sbjct 40858 ATCCATCGAAGGGCCCATTCGGCCTTCTTCTTGACGACGGGGATGGTCTCGACGGCGTCA 40917 Query 50197 AAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATT 50256 ||||| | | | | || | || || ||||| | || || || Sbjct 40918 AAGAGGAACTCGCGCTGCTCGGGCTCGCGGATGTAGGTGTCGATGAGGAGCGAGTAGGTT 40977 Query 50257 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 50316 || || || ||||| || || ||||| || |||||||| |||| ||||||| | Sbjct 40978 TCGGAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCATCGGGCCTCGGCGGCC 41037 Query 50317 TGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCA 50376 || || || | || || || || | | ||||| || || || |||||| || || Sbjct 41038 TGGACCTCGGAACTGAAGCGCTCGACGAGGTTTTCGTTGACGATACCGTCAGAAGCGGCG 41097 Query 50377 AAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATT---CCAA 50433 || || || | || || || || || |||||| | || || || ||| Sbjct 41098 AAGAAGGCAAGGACGTGAGAGATGAAGTGACGCTCGTTGTCGTTGAGCTTGTTGTCCCAG 41157 Query 50434 TCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTT 50493 || | | || || || | || | ||| || | ||||| || || ||||| ||||| Sbjct 41158 TCGTGAAGGTCCTTGGAGAGGTCGATTTCCTCGGCGGTCCAGAAGGAAGCCTCGGCCTTC 41217 Query 50494 TTATACATATTCCAGAT 50510 || ||||| | |||||| Sbjct 41218 TTGTACATTTGCCAGAT 41234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718262398429320