Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20hordei_20[genbank_20GCA_5F000286035.1_202012-05-30] 713 sequences; 21,150,702 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq555 127 3e-24 seq580 118 1e-21 >seq555 Length=342432 Score = 127 bits (140), Expect = 3e-24 Identities = 447/696 (64%), Gaps = 8/696 (1%) Strand=Plus/Minus Query 71974 CCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATA 72033 || || || || || || ||||| | ||||| || |||| | | || | ||||| Sbjct 63930 CCGGGGCACTCGTTGGGGCACATGAGCGACCAATCGCCATTCTGCTCGACCCTCTTCATG 63871 Query 72034 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCT 72093 |||||||| || | ||||||||| || || || | || | | ||||| || || Sbjct 63870 AAGAGATCGGGGACCCAAAGAGCGTAGAAGAGCTCACGGGCACGAACTTCCTCCTTACCG 63811 Query 72094 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 72153 ||||| | ||||||||| | | | ||| || ||||| || || | ||| || Sbjct 63810 TGGTTCTTGCGCAAGTCGAGGAACTCAAAGACATCCGAGTGCCAAGGCTCAATGTAGATA 63751 Query 72154 GCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 72213 || | | || || || ||||| || || || || | ||| | ||| ||||| || | Sbjct 63750 GCAAAGGCACCAGGACGCTTGTTACCACCTTGGTCGACGTAACGAGCAGTGTTGTTGAAG 63691 Query 72214 ACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCA 72273 || | | ||| || | ||||| ||| |||| ||||| |||| || || || Sbjct 63690 ACACGGAGCATGGGCACGATACCGTTGCTGACACCGTTGGTACCGGCAATGTAAGAGCCG 63631 Query 72274 CTGGCACGAATATTGCTAATTGAT----AGACCTATTCCCCCTGCCATTTTAGAGATTAA 72329 | ||||||| || ||| ||| ||||| || || || || | || ||||| | Sbjct 63630 GTACCACGAAT---GC-AATGGATGTTGAGACCGATACCACCGGCGGTCTTGGAGATCAT 63575 Query 72330 TGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAG 72389 || || || | || || ||||| || || || |||||| ||||| | | || Sbjct 63574 GGCACAGGTCTTGAGGGTGTCGTAGATCCCGTCGATCGAGTCATCCTTCATGGTGACAAG 63515 Query 72390 AAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTG 72449 ||||| || | || | | || || || || || | || || || || || Sbjct 63514 GAAACACGACGAGAGCTGAGGGTGGGGGGTACCGGCGTTGAAGAGCGTTGGCGAGGCATG 63455 Query 72450 CGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTG 72509 ||||| | |||| |||| || ||||||||||||||||| || || ||| Sbjct 63454 AGTAAAGTACTTTTGCGACATGAGGTTGTACGTCTCAATAGCACTCTCAATGTCCTGGCC 63395 Query 72510 ATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATT 72569 || || || || || |||||||| | ||| ||||| || | ||| ||| |||| || Sbjct 63394 GTGAATACCGACAGCAACACGCATGATCATGTGCTGGGGACGCTCAGCGACCTTGCCGTT 63335 Query 72570 TATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 72629 || | |||||||||| || | || || ||||| || ||||||| ||||| Sbjct 63334 GATACGGAGCAAGTAGGATCGCTCGAGGGTCTTGAAACCGAAGAAGTTGTAGTGGAAGTC 63275 Query 72630 TCGTTCGTAAATAATAACCGAATTGAGTTTATCCTT 72665 || ||||| || || |||| | ||| | ||||| Sbjct 63274 GCGCTCGTAGATGATGGCCGAGTCGAGCTGGTCCTT 63239 >seq580 Length=301176 Score = 118 bits (130), Expect = 1e-21 Identities = 273/411 (66%), Gaps = 3/411 (1%) Strand=Plus/Plus Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 || || |||||| ||| |||||||| || | | || | ||||| || || ||||| Sbjct 40678 CAGGCAAAATCGGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTAGAGAAGGTGAGA 40737 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAG 42184 |||||||| || || ||||| || ||||| || || || ||||| || || || |||||| Sbjct 40738 CCGGGCATGAGACCGCGCTTCTTGAGCCAGAAGATCGAGGCAAAGGAGCCTGAGAAGAAG 40797 Query 42185 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTG---TCATGT 42241 || ||||| || || |||||||||| || | ||| | | ||| || || | Sbjct 40798 ATACCTTCGACGGCGGCAAAGGCAACGAGACGCTCAGCGAAGGTGGCCTTGCGGTCGTTG 40857 Query 42242 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 42301 ||||| | ||||| ||||||||||| || || || || || || | ||| | | Sbjct 40858 ATCCATCGAAGGGCCCATTCGGCCTTCTTCTTGACGACGGGGATGGTCTCGACGGCGTCA 40917 Query 42302 AAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATT 42361 ||||| | | | | || | || || ||||| | || || || Sbjct 40918 AAGAGGAACTCGCGCTGCTCGGGCTCGCGGATGTAGGTGTCGATGAGGAGCGAGTAGGTT 40977 Query 42362 TCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACC 42421 || || || ||||| || || ||||| || |||||||| |||| |||||||| || Sbjct 40978 TCGGAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCATCGGGCCTCGGCGGCC 41037 Query 42422 TGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCA 42472 || || || | || || || || | | |||||||| || || |||||| Sbjct 41038 TGGACCTCGGAACTGAAGCGCTCGACGAGGTTTTCGTTGACGATACCGTCA 41088 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671133218471880