Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20hordei_20[genbank_20GCA_5F000286035.1_202012-05-30] 713 sequences; 21,150,702 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq580 228 1e-54 seq555 140 5e-28 seq518 89.7 8e-13 >seq580 Length=301176 Score = 228 bits (252), Expect = 1e-54 Identities = 395/563 (70%), Gaps = 16/563 (3%) Strand=Plus/Minus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| |||||||||| ||||| |||| ||||| ||||| | ||| || |||| || Sbjct 41234 ATCTGGCAAATGTACAAGAAGGCCGAGGCTTCCTTCTGGACCGCCGAGGAAATCGACCTC 41175 Query 125079 TCCAAGGACCTGTACGATTGGGAGA-CTCGTTTGACTGAAACTGAGCGAGAGTTTATATC 125137 ||||||||||| |||| ||||| | | | | || ||| ||||| | || || || Sbjct 41174 TCCAAGGACCTTCACGACTGGGACAACAAGCTCAACGACAAC-GAGCGTCACTTCATCTC 41116 Query 125138 GCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACAC 125196 ||| | | |||||||| |||| || || || ||||||||||| || || || || | Sbjct 41115 TCACGTCCTTGCCTTCTTCGCCGCTTCTGACGGTATCGTCAACGAAAACCTCGTCGAG-C 41057 Query 125197 GATTCTCTCAAGAGTTGACCATTCCA--GAGGTGTCGTGCTTTTACGGATTCCAAATCAT 125254 | ||| | ||| | ||| || |||| ||||| ||||| ||||| ||||| Sbjct 41056 GCTTCAGTTCCGAGGT--CCAGGCCGCCGAGGCCCGATGCTTCTACGGTTTCCAGATCAT 40999 Query 125255 GATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCC 125314 ||| |||||| | ||||| |||| ||||| || || |||| ||||| ||||| || Sbjct 40998 GATGGAGAACATCCACTCCGAAACCTACTCGCTCCTCATCGACACCTACATCCGCGAGCC 40939 Query 125315 ---GCAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCC-GTCTATACGTAAAA 125370 ||| || | | |||||| |||| |||| || | || ||| | | || | Sbjct 40938 CGAGCAGCGCGAGTTC---CTCTTTGACGCCGTCGAGACCATCCCCGTCGTCAAG-AAGA 40883 Query 125371 AGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGG 125430 |||| |||||| |||| |||||| | ||| |||| | | | ||| || | || | Sbjct 40882 AGGCCGAATGGGCCCTTCGATGGATCAACGACCGCAAGGCCACCTTCGCTGAGCGTCTCG 40823 Query 125431 TGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGC 125490 | || || |||||||| || || |||||||| || || ||||| | ||||| |||| Sbjct 40822 TTGCCTTTGCCGCCGTCGAAGGTATCTTCTTCTCAGGCTCCTTTGCCTCGATCTTCTGGC 40763 Query 125491 TCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACG 125550 ||||||||||||| ||||||||||| || || | ||||||| | || ||||| |||| Sbjct 40762 TCAAGAAGCGCGGTCTCATGCCCGGTCTCACCTTCTCTAACGAGCTCATCTCTCGTGACG 40703 Query 125551 AGGGCCTACACTGTGACTTTGCC 125573 |||| || ||| || |||||| Sbjct 40702 AGGGTCTTCACACCGATTTTGCC 40680 >seq555 Length=342432 Score = 140 bits (154), Expect = 5e-28 Identities = 303/448 (68%), Gaps = 8/448 (2%) Strand=Plus/Plus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 || || || || || || || || || | || ||||| | || ||||||||| |||| Sbjct 63719 CAAGGTGGTAACAAGCGTCCTGGTGCCTTTGCTATCTACATTGAGCCTTGGCACTCGGAT 63778 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 || ||||| || |||| ||||||| ||| || || || | || ||| | || Sbjct 63779 GTCTTTGAGTTCCTCGACTTGCGCAAGAACCACGGTAAGGAGGAAGTTCGTGCCCGTGAG 63838 Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTAC 97055 | || || || || ||||| || ||| | ||||||||| | ||| | | |||| | Sbjct 63839 CTCTTCTACGCTCTTTGGGTCCCCGATCTCTTCATGAAGAGGGTCGAGCAGAATGGCGAT 63898 Query 97056 TGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTT 97115 ||| || ||||||||| || || ||||| || |||| |||| || || |||||| Sbjct 63899 TGGTCGCTCATGTGCCCCAACGAGTGCCCCGGCCTTGCCGACTGCTACGGTGACGAGTTT 63958 Query 97116 GAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTGAGACGA---GTCGATGCA 97172 ||| ||| | ||||||| ||||| || | || || ||| ||| | || Sbjct 63959 GAGCGTCTCTACGAGCGCTACGAGGCTGAGGGACGCT--GTAAG-CGAACCGTCAAGGCC 64015 Query 97173 CGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCT 97231 | |||| || ||| | |||||| | | ||||| ||||| || | ||| | ||| || Sbjct 64016 C-AGAAGCTCTGGTACGCCATCCTCGAGTCTCAGACCGAGACCGGTAATCCTTTCATCCT 64074 Query 97232 CTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTC 97291 ||||||||| | | || ||||| |||||| || | || ||||||||| |||| Sbjct 64075 CTACAAGGACGCTGCTAACCGCAAGTCCAACCAGAAGAACCTCGGTACCATCAAGTGCTC 64134 Query 97292 CAATCTGTGCACGGAAATTGTAGAGTAC 97319 ||| || ||||| ||||| | |||||| Sbjct 64135 CAACCTCTGCACCGAAATCATCGAGTAC 64162 Score = 113 bits (124), Expect = 7e-20 Identities = 148/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 98038 TCTACAAGACTGTCTGGGAGATTCCGACCAAGACGCTGATCGATATGGCTGCCGACAGAG 98097 |||||||||||||||||||||| || ||| | | ||||| ||||| ||||| ||| Sbjct 64896 TCTACAAGACTGTCTGGGAGATCTCGCAGAAGGCCATCATCGACATGGCCGCCGATCGAG 64955 Query 98098 GTGTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACCTACAGTC 98157 ||| | |||| |||| || ||| ||||| | || | ||| || || | | ||| Sbjct 64956 GTGCTTTCATTTGCCAGTCGCAGTCGCTCAATATCCACCTGTCCGCTCCTACGTTCGGTC 65015 Query 98158 GTATGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATGTACTATC 98217 | |||||||| |||||||||| ||||| ||||| ||||||||||| | ||||| | Sbjct 65016 AGCTCACTTCGATGCACTTTTACGGCTGGAAGAAGGGTCTCAAGACGGGTACCTACTACC 65075 Query 98218 TGAGAACAAAGTCGGCCACCAATGC 98242 | | || ||| | || |||| || Sbjct 65076 TCCGTACCAAGCCAGCATCCAACGC 65100 >seq518 Length=347958 Score = 89.7 bits (98), Expect = 8e-13 Identities = 171/249 (69%), Gaps = 6/249 (2%) Strand=Plus/Minus Query 127447 CCGTGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCGGTTTA 127506 ||||| || ||||| || ||| ||||||| |||| |||||||| | | || || | Sbjct 290938 CCGTGGGTAAGGTGACCACCGGAGGGCAGACCGAGACCCATGATACGGTCTTGGGGCTGG 290879 Query 127507 ACGATTCCAGTGTACACGGCAAAGTTGGCCATCGAGCCCGAGTACGGTTGTACACACACT 127566 | || ||||| | || |||||||| ||||||| ||||| || || || || Sbjct 290878 AGGAGAGCAGTGAAGGTAGCGAAGTTGGCAGTCGAGCCAGAGTAAGGCTGGACGTTGACG 290819 Query 127567 CCCCATTCGGACTCGT--TCAAA-TTGAACGCTCTGAGACATCGCTGCTGTGCTAGCAGT 127623 ||||| | || | |||| ||||| || | ||| |||||||| || | Sbjct 290818 CCCCAGAC---CTTGGGGTCAAGGTTGAAGGCCTTAAGAGCACGCTGCTGGCAGAGGATC 290762 Query 127624 TCGATGCGATCGATAAACTCGTTACCACCATAGTATCGCTTTCCGGGCCTACCCTCCGAG 127683 |||| ||||||| |||| |||||||| |||||||| ||||| |||||| ||| Sbjct 290761 TCGAGCTGATCGATGTACTCATTACCACCGTAGTATCGGGCGCCGGGGAGACCCTCGGAG 290702 Query 127684 TACTTGTTG 127692 ||||||||| Sbjct 290701 TACTTGTTG 290693 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741052595309880