Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20hordei_20[genbank_20GCA_5F000286035.1_202012-05-30] 713 sequences; 21,150,702 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq578 134 3e-26 seq580 86.0 1e-11 >seq578 Length=360407 Score = 134 bits (148), Expect = 3e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || ||||| | || || ||||||||||| || || || || || || | || || Sbjct 207294 AGAACGAGATGAAGGGTGGACTCTTTCTGAATGTTGTAATCCGAGAGGGTACGGCCATCC 207235 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || || || ||||| || || || | ||| ||||||||||| |||||||| || ||| Sbjct 207234 TCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGAGGAATTCCTTCCTTGTCC 207175 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 || ||||| || || ||||| || | ||| || ||| || ||||| || || || ||| Sbjct 207174 TGGATCTTGGCCTTGACATTGTCAATGGTGTCCGAAGGCTCGACCTCGAGGGTGATGGTC 207115 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || || || ||||| |||||||| Sbjct 207114 TTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 207083 Score = 113 bits (124), Expect = 1e-19 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || ||||| || || || || ||||| || || ||||| || || || | || ||| Sbjct 207522 AGGACAAGATGCAAAGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCT 207463 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || || || || ||||| || || | ||| |||||||| || || || || || ||| Sbjct 207462 TCAAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGATCAGGGGGAATACCCTCCTTGTCC 207403 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 |||||||| || || || || || | ||| || | || ||||| || || || ||| Sbjct 207402 TGAATCTTGGCCTTGACGTTGTCAATGGTGTCAGAGGACTCGACCTCAAGAGTGATGGTC 207343 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || | || || ||||| |||||||| Sbjct 207342 TTGCCGGTCAAAGTCTTGACAAAGATCTGCAT 207311 >seq580 Length=301176 Score = 86.0 bits (94), Expect = 1e-11 Identities = 114/158 (72%), Gaps = 3/158 (2%) Strand=Plus/Minus Query 269087 GAATGGGCTCTGAAATGGATAAACGATAGC---GCGCCTTACGGAGAAAGGTTAGTTGCT 269143 |||||||| || |||||| ||||| || || | | || || | | ||||| Sbjct 40877 GAATGGGCCCTTCGATGGATCAACGACCGCAAGGCCACCTTCGCTGAGCGTCTCGTTGCC 40818 Query 269144 TTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAG 269203 |||||||| || |||||||| ||||| || || || |||||| | ||||| ||| | ||| Sbjct 40817 TTTGCCGCCGTCGAAGGTATCTTCTTCTCAGGCTCCTTTGCCTCGATCTTCTGGCTCAAG 40758 Query 269204 AAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGA 269241 || | || || ||||| || | || ||||||||||| Sbjct 40757 AAGCGCGGTCTCATGCCCGGTCTCACCTTCTCTAACGA 40720 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151387881615804