Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20hordei_20[genbank_20GCA_5F000286035.1_202012-05-30] 713 sequences; 21,150,702 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq535 152 8e-33 >seq535 Length=308499 Score = 152 bits (168), Expect = 8e-33 Identities = 182/246 (74%), Gaps = 1/246 (0%) Strand=Plus/Minus Query 16447 CAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCG 16506 ||||||| | ||||| |||||||| || ||||||||||| |||||||| ||||| || || Sbjct 31471 CAGATCT-TGCGAGACAACATCCAGGGTATCACCAAGCCCGCTATCCGACGTCTCGCGCG 31413 Query 16507 TCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAA 16566 ||||||||| || |||||| ||||||| | |||| || |||| |||| ||| | || Sbjct 31412 TCGTGGTGGTGTTAAGCGTATCTCTGGGCTTATCTACGACGAGACCCGTGGTGTCCTCAA 31353 Query 16567 GATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAA 16626 | ||||||| || | ||||||| || | || || || ||||| || || || || Sbjct 31352 GCTCTTCCTTGAGTCGGTTATCCGCGACTCGGTCACTTACACTGAGCATGCCAAGCGCAA 31293 Query 16627 GACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGG 16686 ||| |||||||| | || | ||||| || | || || |||||||| | | || || Sbjct 31292 GACCGTCACCTCGCTCGACGTTGTCTACGCTCTTAAGCGCCAAGGCCGAACCCTCTACGG 31233 Query 16687 TTTTGG 16692 ||| || Sbjct 31232 TTTCGG 31227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79074548099109