Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20hordei_20[genbank_20GCA_5F000286035.1_202012-05-30] 713 sequences; 21,150,702 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq555 149 8e-31 seq580 116 5e-21 >seq555 Length=342432 Score = 149 bits (164), Expect = 8e-31 Identities = 442/681 (65%), Gaps = 8/681 (1%) Strand=Plus/Minus Query 63183 GGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATC 63242 || ||||| | |||||| || || | | || || | ||||| |||||||| || | | Sbjct 63915 GGGCACATGAGCGACCAATCGCCATTCTGCTCGACCCTCTTCATGAAGAGATCGGGGACC 63856 Query 63243 CAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGA 63302 |||||||| || || || | || | | |||||| || || ||||| | Sbjct 63855 CAAAGAGCGTAGAAGAGCTCACGGGCACGAACTTCCTCCTTACCGTGGTTCTTGCGCAAG 63796 Query 63303 TCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGC 63362 ||||||||| | | | ||| || ||||| || || | ||| || || | | ||||| Sbjct 63795 TCGAGGAACTCAAAGACATCCGAGTGCCAAGGCTCAATGTAGATAGCAAAGGCACCAGGA 63736 Query 63363 CGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGA 63422 || ||||| || || || || | ||| | ||| ||||| || | || | | ||| || Sbjct 63735 CGCTTGTTACCACCTTGGTCGACGTAACGAGCAGTGTTGTTGAAGACACGGAGCATGGGC 63676 Query 63423 ATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTA 63482 | |||||||| | ||| |||||||||| || || || | ||||||| Sbjct 63675 ACGATACCGTTGCTGACACCGTTGGTACCGGCAATGTAAGAGCCGGTACCACGAATGC-- 63618 Query 63483 CTAATTGAT----AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAA 63538 ||| ||| ||||| || || || || | || ||||| | || || || | Sbjct 63617 --AATGGATGTTGAGACCGATACCACCGGCGGTCTTGGAGATCATGGCACAGGTCTTGAG 63560 Query 63539 CGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACAT 63598 ||||| ||||| || || || ||||| ||||| | | || ||||| || | Sbjct 63559 GGTGTCGTAGATCCCGTCGATCGAGTCATCCTTCATGGTGACAAGGAAACACGACGAGAG 63500 Query 63599 TTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTC 63658 || | | || || || || || | || || || || || ||||| | |||| Sbjct 63499 CTGAGGGTGGGGGGTACCGGCGTTGAAGAGCGTTGGCGAGGCATGAGTAAAGTACTTTTG 63440 Query 63659 AGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGC 63718 || | || ||||||||||||||||| || || ||| ||||| || || || Sbjct 63439 CGACATGAGGTTGTACGTCTCAATAGCACTCTCAATGTCCTGGCCGTGAATACCGACAGC 63380 Query 63719 GACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTA 63778 |||||||| | ||||||||| || | ||| ||| |||| ||| || | |||||| Sbjct 63379 AACACGCATGATCATGTGCTGGGGACGCTCAGCGACCTTGCCGTTGATACGGAGCAAGTA 63320 Query 63779 GGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63838 |||| || | || || ||||| || ||||||| ||||| || ||||| || || Sbjct 63319 GGATCGCTCGAGGGTCTTGAAACCGAAGAAGTTGTAGTGGAAGTCGCGCTCGTAGATGAT 63260 Query 63839 AACCGAGTTGAGTTTATCCTT 63859 |||||| ||| | ||||| Sbjct 63259 GGCCGAGTCGAGCTGGTCCTT 63239 >seq580 Length=301176 Score = 116 bits (128), Expect = 5e-21 Identities = 363/558 (65%), Gaps = 8/558 (1%) Strand=Plus/Plus Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363 || || |||||| ||| ||||||||||| | | || || ||||| || || ||||| Sbjct 40678 CAGGCAAAATCGGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTAGAGAAGGTGAGA 40737 Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423 |||||||| || || ||||| || ||||| || || || || || || || || |||||| Sbjct 40738 CCGGGCATGAGACCGCGCTTCTTGAGCCAGAAGATCGAGGCAAAGGAGCCTGAGAAGAAG 40797 Query 33424 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGC---GCTGTCATGT 33480 || ||||| || || |||||||||| || | ||| | | ||| || ||| | Sbjct 40798 ATACCTTCGACGGCGGCAAAGGCAACGAGACGCTCAGCGAAGGTGGCCTTGCGGTCGTTG 40857 Query 33481 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 33540 ||||| | ||||| ||||||||||| || || || || || || | ||| | | Sbjct 40858 ATCCATCGAAGGGCCCATTCGGCCTTCTTCTTGACGACGGGGATGGTCTCGACGGCGTCA 40917 Query 33541 AAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATT 33600 ||||| | | | | || | || || ||||| | || || || Sbjct 40918 AAGAGGAACTCGCGCTGCTCGGGCTCGCGGATGTAGGTGTCGATGAGGAGCGAGTAGGTT 40977 Query 33601 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 33660 || || || ||||| || || ||||| || |||||||| |||| ||||||| | Sbjct 40978 TCGGAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCATCGGGCCTCGGCGGCC 41037 Query 33661 TGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCA 33720 || || || | || || || || | | ||||| || || || |||||| || || Sbjct 41038 TGGACCTCGGAACTGAAGCGCTCGACGAGGTTTTCGTTGACGATACCGTCAGAAGCGGCG 41097 Query 33721 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTTTATT---CCA 33776 || || || | || || || || | |||| || ||| || || || ||| Sbjct 41098 AAGAAGGCAAGGACGTGAGAGATGAAGTGACGCTCGT-TGTCGTTGAGCTTGTTGTCCCA 41156 Query 33777 ATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 33836 || | | || || || | || | ||| || | ||||| || || ||||| ||||| Sbjct 41157 GTCGTGAAGGTCCTTGGAGAGGTCGATTTCCTCGGCGGTCCAGAAGGAAGCCTCGGCCTT 41216 Query 33837 TTTATACATGTTCCAGAT 33854 || ||||| | |||||| Sbjct 41217 CTTGTACATTTGCCAGAT 41234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622941647983080