Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20hordei_20[genbank_20GCA_5F000286035.1_202012-05-30] 713 sequences; 21,150,702 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq555 331 2e-85 seq580 93.3 1e-13 >seq555 Length=342432 Score = 331 bits (366), Expect = 2e-85 Identities = 1164/1793 (65%), Gaps = 40/1793 (2%) Strand=Plus/Plus Query 363391 TTCGGATATAAGACGATGGAGAAATCCTACCTATCTCGTATCAATGGTGATATTGTTGAA 363450 ||||| | ||||| | ||| ||||||| | |||||||| || | | | ||| Sbjct 63293 TTCGGTTTCAAGACCCTCGAGCGATCCTACTTGCTCCGTATCAACGGCAAGGTCGCTGAG 63352 Query 363451 CGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGATGCC 363510 || || ||||| ||| | |||||||||||| | ||||| || ||| ||| |||| Sbjct 63353 CGTCCCCAGCACATGATCATGCGTGTTGCTGTCGGTATTCACGGCCAGGACATTGAGAGT 63412 Query 363511 GCGATTGAAACATATAAGCTTCTAAGT-GCTCGTGTA-TTCACGCACGCCACGCCAACAA 363568 || ||||| || || || || | || || ||| || || || ||| ||||||| Sbjct 63413 GCTATTGAGACGTACAACCTCAT--GTCGCAAAAGTACTTTACTCATGCCTCGCCAACGC 63470 Query 363569 TGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAAGG 363628 | | ||| || || || | | || ||| | || || || || ||| | | ||||||| Sbjct 63471 TCTTCAACGCCGGTACCCCCCACCCTCAGCTCTCGTCGTGTTTCCTTGTCACCATGAAGG 63530 Query 363629 ACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAATG 363688 | || || ||||| || |||| ||||| || |||| ||||| | || ||||||| | Sbjct 63531 ATGACTCGATCGACGGGATCTACGACACCCTCAAGACCTGTGCCATGATCTCCAAGACCG 63590 Query 363689 CAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC-ACAGAACAGTTACATTCGCGGC 363747 | || || || ||| | ||||| |||||| || | | ||||||| ||| Sbjct 63591 CCGGTGGTATCGGTCTCAACATCCATTGCATTCGTGGTACCGG-CTCTTACATTGCCGGT 63649 Query 363748 ACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGAGG 363807 || || | || || | || |||||||| ||||| || |||| ||||| | Sbjct 63650 ACCAACGGTGTCAGCAACGGTATCGTGCCCATGCTCCGTGTCTTCAACAACACTGCTCGT 63709 Query 363808 TACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCAT 363867 ||||||||||| ||||| ||||| || || |||||||| || | |||||| Sbjct 63710 TACGTCGACCAAGGTGGTAACAAGCGTCCTGGTGCCTTTGCTATCTACATTGAGCCTTGG 63769 Query 363868 CATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTGCGT 363927 || | ||| | |||||||| || || | || || ||| || || |||||| | ||| Sbjct 63770 CACTCGGATGTCTTTGAGTTCCTCGACTTGCGCAAGAACCACGGTAAGGAGGAAGTTCGT 63829 Query 363928 GCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAGGCA 363987 || ||||| || ||||| || |||||||| | || | || |||||| | || || ||| Sbjct 63830 GCCCGTGAGCTCTTCTACGCTCTTTGGGTCCCCGATCTCTTCATGAAGAGGGTCGA-GCA 63888 Query 363988 G-GTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTATGGGG 364046 | | ||||||| ||| | ||||| |||| || || || ||| |||| | || Sbjct 63889 GAATGGCGATTGGTCGCTCATGTGCCCCAACGAGTGCCCCGGCCTTGCCGACTGCTACGG 63948 Query 364047 TGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAAG---AC 364103 |||||| | || ||| ||||| || || | ||||| | ||| ||||| || Sbjct 63949 TGACGAGTTTGAGCGTCTCTACGAGCGCTACGAGGCTGAGGG--ACGCT-GTAAGCGAAC 64005 Query 364104 AATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACC 364163 | || |||||||| |||| |||||| | || || |||| ||||| || | || Sbjct 64006 CGTCAAGGCCCAGAAGCTCTGGTACGCCATCCTCGAGTCTCAGACCGAGACCGGTAATCC 64065 Query 364164 CTATATGTTGTACAAAGATTCGTGC-AACCGCAAGTCCAACCAGCAGCACCTTGGTACAA 364222 | || | ||||| || | ||| |||||||||||||||||| || |||| ||||| | Sbjct 64066 TTTCATCCTCTACAAGGACGC-TGCTAACCGCAAGTCCAACCAGAAGAACCTCGGTACCA 64124 Query 364223 TTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCCG 364282 | || |||||| || ||||| || || || ||| | || ||||| ||| || | Sbjct 64125 TCAAGTGCTCCAACCTCTGCACCGAAATCATCGAGTACTCTGCCCCCGATGAGGTCGCTG 64184 Query 364283 TATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGTAAAAGATGGTACTTTTGACCAC- 364341 | || ||| | || || ||||| || || | || | | || ||| | | || Sbjct 64185 TCTGCAACTTGGCCTCCATCGCCCTCCCCACCTTCATCGACCCTGTTACCAAGGTCTACG 64244 Query 364342 -----CAGCATCTTTATGACGTAACCTATCATGCTACTTGCA--ATCTCG-ACAAGGTTA 364393 ||| ||| |||| || || | || | |||| | || | ||||| | | Sbjct 64245 ATTTTAAGCGTCTGCATGAGGTCGCC---AAAGCCATCTGCAAGAACTTGAACAAGATCA 64301 Query 364394 TCGACAAGAATTATTATCCAATTCCTGAAGCCGAGCGTTCTAATATGCGTCATCGCCCGA 364453 |||||| || ||||| || || ||||| || || || |||||||| || || | Sbjct 64302 TCGACATCAACTATTACCCCGTTGAAGAAGCTCGTCGATCCAACATGCGTCACCGTCCCA 64361 Query 364454 TTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTCAAGATGGCATTTGATT 364513 | ||| | ||||| ||||| ||||| || | || ||||| | | || || || | Sbjct 64362 TCGGTATCGGTGTTCAGGGTCTCGCCGATGCATTCATGATCATGGGGTATGCCTTCGAGT 64421 Query 364514 CGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATTTTGCCGCAAT-G 364572 | ||||| || ||| | | || | ||||||| || || || || ||||| | | Sbjct 64422 CCCCTGAGGCGCGTCGTTTGAACGTGCAGATCTTCGAGACCATCTACCACGCCGCTCTCG 64481 Query 364573 ACTGCTTCGTGTGATTTGGCAAAAACCAAGGGAAAGTACTCTACTTATGAGGGGTCCCCT 364632 | | ||||| || ||||| | | || | ||| || || | || || || Sbjct 64482 AGCG-ATCGTGCGAGTTGGCTCAGGAGCACGGCACCTACGAGACATACCAAGGTTCGCCC 64540 Query 364633 CTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCACGCCATCTGTCCGATGGAAC 364692 ||| |||||| || | |||| || | ||| |||||| || || | || ||| || Sbjct 64541 GCTTCCCAGGGAGAACTTCAGTACGACATGTGGGGTGTCACTCCCTCCGACCTCTGGGAC 64600 Query 364693 TGGGATACGCTACGTTCCAACGTTAAGAAGCATGGTACTCGCAACTCCCTCGTTACAGCG 364752 |||| | |||| | ||| | ||||| ||| ||| ||||| || | || Sbjct 64601 TGGGCTTCGCTCAAGGCTAACATCGCCAAGCACGGTCTTCGTAACTCACTTTTGTTGGCA 64660 Query 364753 CCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGAACCGTTT 364812 ||||||||||| ||||| || |||||| | || ||||||||||||||| || | Sbjct 64661 CCCATGCCCACTGCTTCGACCAGTCAGATCTTGGGCTTCAACGAGTGCTTCGAGCCCTAC 64720 Query 364813 ACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTAATAAGTAC 364872 || ||| | || || || || || ||| | || ||||| | ||| || || | Sbjct 64721 ACTTCCAACATCTACTCTCGTCGTGTACTTGCTGGTGAATTCCAGGTCGTCAACCCCTGG 64780 Query 364873 CTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAAGAACTATATCATC 364932 | || || | ||| | || || ||| |||| ||||||||| |||||| Sbjct 64781 TTGCTCCGCGAGTTGGTCGAACAGGGACTTTGGAACGACACAATGAAGAACCGAATCATC 64840 Query 364933 GCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAGAAGATCTGAAGCCTATTTAC 364992 || ||| || | || ||| | || || | || || | | ||| | ||| Sbjct 64841 GCTCACGGTGGCTCCATCCAAAACGTCCCCGGTATCCCCGACCGTATCAAGAAGCTCTAC 64900 Query 364993 AAAACCGTATGGGAAATTTC-CATGCGAA--CTCTCATTGATATGGCGGCCGATCGCGGT 365049 || || || ||||| || || || ||| | |||| || ||||| |||||||| ||| Sbjct 64901 AAGACTGTCTGGGAGATCTCGCA---GAAGGCCATCATCGACATGGCCGCCGATCGAGGT 64957 Query 365050 GCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCA--TGACTCAGCCAACCTCCGCCA 365107 ||||| || || ||| |||||| | || ||| || || | || || | || Sbjct 64958 GCTTTCATTTGCCAGTCGCAGTCGCTCAA--TATCCACCTGTCCGCTCCTACGTTCGGTC 65015 Query 365108 AGCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTCTTAAGACAGGTGCC 365160 |||| || || ||||| || ||||| ||||| ||||| ||||| ||| || Sbjct 65016 AGCTCACTTCGATGCACTTTTACGGCTGGAAGAAGGGTCTCAAGACGGGTACC 65068 >seq580 Length=301176 Score = 93.3 bits (102), Expect = 1e-13 Identities = 149/212 (70%), Gaps = 3/212 (1%) Strand=Plus/Minus Query 22435 AAGAATAAGGCAGATTGGGCGCTGAAATGGATGAACAAT-GAACGTTCA--TTCGCGGAA 22491 ||||| ||||| || ||||| || |||||| ||| | | | | || ||||| || Sbjct 40889 AAGAAGAAGGCCGAATGGGCCCTTCGATGGATCAACGACCGCAAGGCCACCTTCGCTGAG 40830 Query 22492 CGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATC 22551 ||||| |||| ||||| | || ||||| || ||||| || || | ||| | ||| Sbjct 40829 CGTCTCGTTGCCTTTGCCGCCGTCGAAGGTATCTTCTTCTCAGGCTCCTTTGCCTCGATC 40770 Query 22552 TTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGC 22611 || ||||| || || || | | ||||| ||||| || || || || ||| | || Sbjct 40769 TTCTGGCTCAAGAAGCGCGGTCTCATGCCCGGTCTCACCTTCTCTAACGAGCTCATCTCT 40710 Query 22612 CGAGATGAGGGTCTTCATACCGATTTTGCGTG 22643 || || ||||||||||| ||||||||||| || Sbjct 40709 CGTGACGAGGGTCTTCACACCGATTTTGCCTG 40678 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303341693457566